SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31885

Length: 1977 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene31885
CGTCGTGACCTCGTCGTCACCTTGTTCTTGACAAGATTGCTATTCCTATTGATGTAAATGACCGCCCTACAATGTTGAAAATGGTTAAGAGCTGTATTGGCACAAAATTTACTGGTCAATTTGGAGACCTCATCGCGGATATGGCAATTGATGCAACAACTACCGTGGGTGTTGATCTTGGTAATGGGTTGCATGAAGTTGATATAAAGAAATATGTTAAAGTAGAGAAGGTTCCTGGAGGCCAGTTGGAAGATTCAAAGGTTCTCAGGGGTGTTATGATTAACAAAGATGTTGTCGCACCTAGTAAAATGAGGAGAAAAATTGTCAATCCTCGAATCATTCTTTTGGACTGTCCGCTTGAGTACAAAAAGGGAGAGAACATGACAAATGCAGAATTAATTAGAGAAGAGGACTGGGGTGTTTTATTGAAGATGGAAGAGGAGTATATTGAAAAGATTTGTGTGCAAATTTTATCTTTCAAGCCAGATTTAGTAGTCACTGAAAAGGGGCTTAGTGATCTTGCTGCTCACTACTTTAGTAAAGCAGGAGTTAGTGCAATCAGAAGACTAAGGAAAACGGATAACAATAGAATTGCTAAAGCTTCCGGAGCTACAGTTGTAAACAGACCGGAGGAACTGCAGGAAAGTGATGTTGGAACTGGGGCAGGATTGTTTGAGGTCCAAAAGATTGGGGACGAGTATTTTACTTTTATAGTTGACTGCAAGGATCCAAAAGCTTGCACAGTCCTTCTGAGAGGTGCCAGCAAAGACCTATTAAATGAGGTTGAACGGAATTTGCAGGATGCCATGTCAGTAGCCCGAAATATGATCAAGAATCCAAAGCTTGTTCCAGGTGGTGGTGCAACTGAACTCACAGTATCAGCAACTTTGAAACAAAAGAGTTCAACGGTTGAGGGCATAGAGAAGTGGCCTTATGAAGCCGTGGCTTTAGCTTTTGAGGCAATACCAAGAACTTTGGCCCAAAATTGTGGTGTGAATGTCATTAGAACGATGACAGCATTGCAAGCAAAGCATGCCAATGGGGAAAATGTGTGGACTGGGATAGATGGCAACACAGGAGCAATCACTGACATGAAAGAACGCGGGATATGGGATGCGTATAATGTGAAAGCCCAAACCTTCAAAACAGCCATTGAGGCAGCCTGTATGCTTCTTAGAATTGATGACGTTGTAAGTGGAATAAAGAAGAAGCAAGCTCCAGGCAGTTCAGGACCAACAAAACCTCAAGTAGAGGATGAAAAGGACGTTGACAGTGAGCAGATGATTCCAGAATAATGAGATACCTGTTTACAATTAAGTCGCGCTTGTCAATTCCAGCAATGTTTATTATGCTTTGGATGATAATGCTTCTGTCAAGATTTGCCACAGTTATTAATGAATTCAAGTGCAAGTACAAGGTATTGGTTTTGGAGTGATAAATGTCAATGAGGAGAAAGTCGGGGGTGAGGGTGGTGTGTGTGATTTTGTGAGTACATTATAATTTTTTACGGGGTTCTCTCTCTAATTTTAACTTGCAGATGGACGGTAGGCATGCATTTATTTCAGACTCTAACTGGCCTACTGCTGCTGTCATTTCATAGAACATGAATTATTTTTGCACAGCGTCAACGTTTTTGCCCATGGAAAAAGCAGAATGCACTTTAATCAATGTATTTCTAGTTTTTTGAATGAGTTTATAGAATCCGATGTCAAGAATTTGACAAACAGTATGGGGTATAAATTGATGTTCAGATTGTCATCACATAATTCCATTCCACTTGGATCAGCTGTGGCAAGCATACGCCCGTTTTATTACTGATGTTTTTGAATGAACATTTTACTCTTGCAGCATCATATTTACTGCCAAAGTGATTCCATTGTTGGTCAATGTAAATACGAGTGTATTGCTATTGCTTTGTCACAGTACTGGGTCCAATCAAAGCTTCTATCAAAAATCGTTAGTATCATGGATGGTTGC

Ace file of the UniGene sp_v2.0_unigene31885 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] gb\|AAO22566.1\| putative chaperonin gamma chain [Arabidopsis thaliana] gb\|AED93554.1\| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	t-complex protein 1 subunit gamma-like	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	T-complex protein 1, gamma subunit	IPR012719	-	-
Sma3	Chaperone, tailless complex polypeptide 1	IPR017998	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A831

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 431 - 556

Fln protein: S*PRRHLVLDKIAIPIDVNDRPTMLKMVKSCIGTKFTGQFGDLIADMAIDATTTVGVDLGNGLHEVDIKKYVKVEKVPGGQLEDSKVLRGVMINKDVVAPSKMRRKIVNPRIILLDCPLEYKKGENMTNAELIREEDWGVLLKMEEEYIEKICVQILSFKPDLVVTEKGLSDLAAHYFSKAGVSAIRRLRKTDNNRIAKASGATVVNRPEELQESDVGTGAGLFEVQKIGDEYFTFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNMIKNPKLVPGGGATELTVSATLKQKSSTVEGIEKWPYEAVALAFEAIPRTLAQNCGVNVIRTMTALQAKHANGENVWTGIDGNTGAITDMKERGIWDAYNVKAQTFKTAIEAACMLLRIDDVVSGIKKKQAPGSSGPTKPQVEDEKDVDSEQMIPE*

Protein Length: 432

Fln nts: CGTCGTGACCTCGTCGTCACCTTGTTCTTGACAAGATTGCTATTCCTATTGATGTAAATGACCGCCCTACAATGTTGAAAATGGTTAAGAGCTGTATTGGCACAAAATTTACTGGTCAATTTGGAGACCTCATCGCGGATATGGCAATTGATGCAACAACTACCGTGGGTGTTGATCTTGGTAATGGGTTGCATGAAGTTGATATAAAGAAATATGTTAAAGTAGAGAAGGTTCCTGGAGGCCAGTTGGAAGATTCAAAGGTTCTCAGGGGTGTTATGATTAACAAAGATGTTGTCGCACCTAGTAAAATGAGGAGAAAAATTGTCAATCCTCGAATCATTCTTTTGGACTGTCCGCTTGAGTACAAAAAGGGAGAGAACATGACAAATGCAGAATTAATTAGAGAAGAGGACTGGGGTGTTTTATTGAAGATGGAAGAGGAGTATATTGAAAAGATTTGTGTGCAAATTTTATCTTTCAAGCCAGATTTAGTAGTCACTGAAAAGGGGCTTAGTGATCTTGCTGCTCACTACTTTAGTAAAGCAGGAGTTAGTGCAATCAGAAGACTAAGGAAAACGGATAACAATAGAATTGCTAAAGCTTCCGGAGCTACAGTTGTAAACAGACCGGAGGAACTGCAGGAAAGTGATGTTGGAACTGGGGCAGGATTGTTTGAGGTCCAAAAGATTGGGGACGAGTATTTTACTTTTATAGTTGACTGCAAGGATCCAAAAGCTTGCACAGTCCTTCTGAGAGGTGCCAGCAAAGACCTATTAAATGAGGTTGAACGGAATTTGCAGGATGCCATGTCAGTAGCCCGAAATATGATCAAGAATCCAAAGCTTGTTCCAGGTGGTGGTGCAACTGAACTCACAGTATCAGCAACTTTGAAACAAAAGAGTTCAACGGTTGAGGGCATAGAGAAGTGGCCTTATGAAGCCGTGGCTTTAGCTTTTGAGGCAATACCAAGAACTTTGGCCCAAAATTGTGGTGTGAATGTCATTAGAACGATGACAGCATTGCAAGCAAAGCATGCCAATGGGGAAAATGTGTGGACTGGGATAGATGGCAACACAGGAGCAATCACTGACATGAAAGAACGCGGGATATGGGATGCGTATAATGTGAAAGCCCAAACCTTCAAAACAGCCATTGAGGCAGCCTGTATGCTTCTTAGAATTGATGACGTTGTAAGTGGAATAAAGAAGAAGCAAGCTCCAGGCAGTTCAGGACCAACAAAACCTCAAGTAGAGGATGAAAAGGACGTTGACAGTGAGCAGATGATTCCAGAATAA___TGAGATACCTGTTTACAATTAAGTCGCGCTTGTCAATTCCAGCAATGTTTATTATGCTTTGGATGATAATGCTTCTGTCAAGATTTGCCACAGTTATTAATGAATTCAAGTGCAAGTACAAGGTATTGGTTTTGGAGTGATAAATGTCAATGAGGAGAAAGTCGGGGGTGAGGGTGGTGTGTGTGATTTTGTGAGTACATTATAATTTTTTACGGGGTTCTCTCTCTAATTTTAACTTGCAGATGGACGGTAGGCATGCATTTATTTCAGACTCTAACTGGCCTACTGCTGCTGTCATTTCATAGAACATGAATTATTTTTGCACAGCGTCAACGTTTTTGCCCATGGAAAAAGCAGAATGCACTTTAATCAATGTATTTCTAGTTTTTTGAATGAGTTTATAGAATCCGATGTCAAGAATTTGACAAACAGTATGGGGTATAAATTGATGTTCAGATTGTCATCACATAATTCCATTCCACTTGGATCAGCTGTGGCAAGCATACGCCCGTTTTATTACTGATGTTTTTGAATGAACATTTTACTCTTGCAGCATCATATTTACTGCCAAAGTGATTCCATTGTTGGTCAATGTAAATACGAGTGTATTGCTATTGCTTTGTCACAGTACTGGGTCCAATCAAAGCTTCTATCAAAAATCGTTAGTATCATGGATGGTTGC

Fln Alignment:

AllPineV4_c16026___VLDKIAIPIDVNDRPTMLKMVKSCIGTKFTGQFGDLIADMAIDATTTVGVDLGNGLHEVDIKKYVKVEKVPGGQLEDSKVLRGVMINKDVVAPSKMRRKIVNPRIILLDCPLEYKKGENMTNAELIREEDWGVLLKMEEEYIEKICVQILSFKPDLVVTEKGLSDLAAHYFSKAGVSAIRRLRKTDNNRIAKASGATVVNRPEELQESDVGTGAGLFEVQKIGDEYFTFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNMIKNPKLVPGGGATELTVSATLKQKSSTVEGIEKWPYEAVALAFEAIPRTLAQNCGVNVIRTMTALQAKHANGENVWTGIDGNTGAITDMKERGIWDAYNVKAQTFKTAIEAACMLLRIDDVVSGIKKKQAPGSSGPTKPQVEDEKDVDSEQMIPE
D5A831_______________VLNKISIPIDVNDRPTMLKMVKSCIGTKFTGQFGDLIADMAIDATTTVGVDLGNGLREVDIKKYVKVEKVPGGQLEDSKVLRGVMFNKDVVAPGKMRRKIVNPRIILLDCPLEYKKGENMTNAELIREEDWGVLLKMEEEYIEKICMQILCFKPDLVITEKGLSDLAAHYLSKAGVSAIRRLRKTDNNRIAKACGATVVNRPEELQESDVGTGAGLFEVQKIGDEYFTYIVECKDPKACTVLLRGASKDLLNEVGRNLQDAMSVARNMIKNPKLVPGGGATELTVSATLKQKSSSVEGIDKWPYEAVALAFEAIPRTLAQNCGVNVIRTMTALQAKHANGENVWTGIDGNTGAITDMKERGIWDAYNVKAQTFKTAIEAACMLLRIDDVVSGIKKKQAPGSSAPAKPQVEDEKDVDSEQMIPE

SNPs (tot: 79)

Position	A %	C %	G %	T %	Probability
250	25	75			0.996479
380	22	77			0.999999
398	88			11	0.923564
403		88		11	0.923564
404	88		11		0.923564
405	11		88		0.923564
406		11		88	0.923564
409		11	88		0.923564
411	11	88			0.923564
415	11			88	0.923564
416		11		88	0.923564
419			88	11	0.923564
423	12			87	0.992554
424		87	12		0.992554
430	87		12		0.992554
431		12		87	0.992554
432	87	12			0.992554
435			12	87	0.992554
440		12		87	0.992554
442	12	87			0.992554
444			12	87	0.992554
527		83		16	0.994512
549		14	85		0.993533
550	85	14			0.993533
1253	75		25		1.0
1316	10	80	10		0.959698
1318		90	10		0.90298
1320	90	10			0.90298
1321			10	80	0.959698
1322		88	11		0.991528
1323			11	88	0.991528
1325		11		88	0.991528
1326	11			88	0.991528
1327		11	88		0.991528
1331		88	11		0.991528
1442	14			85	0.993533
1462	16	83			0.994512
1464			83	16	0.994512
1581	83	16			0.994512
1751		6		93	0.999153
1752		6	93		0.999264
1753	93	6			0.999264
1881	12			88	1.0
1883	12	88			1.0
1884			16	84	1.0
1889	83		16		1.0
1890			16	83	1.0
1892		16	83		1.0
1895		91		8	0.999807
1896		73	26		1.0
1901		11		88	0.999937
1902	88	11			0.999937
1906			11	88	0.999952
1910		11		88	0.999952
1912	11	88			0.999952
1914	88		11		0.999952
1944	90			10	0.90298
1949	10		90		0.90298
1951		10		90	0.90298
1954	10			90	0.90298
1955			10	90	0.90298
1970	87		12		0.992554
1972	87		12		0.992554
1973	12		87		0.992554
1976	75		12		0.975346
1977	14	14		71	0.984337
1978		75		12	0.975346
1980	14		28	57	1.0
1981	28		14	57	1.0
1984		75	25		1.0
1990	71	28			1.0
1992	85		14		0.993534
1993	33		33	33	0.997753
1994		25	75		0.996476
1996	25		75		0.996477
1999		50	50		1.0
2003			75	25	0.996477
2004	33	33		33	0.997753
2006	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain