SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31857

Length: 353 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene31857
GCCCAGGACCAGTTGCATCAAAAACCAGTTTTGTGGGATCTGGACTGAGCCCTGTGAATAGGAAGGAGAATCTGGTTTGGACGGACAGCGGGAACAGTTCGGCCAATGTCAGGGTGGAGAATGGTTAGAGCAAATGCTCTTCCCCAAAGCTAAAGAGAAAACGTCCGCAGAGATTGGATATTCAGCTCCAGTTGCCGGACCTAAACTCGCTGTTCTCAGCGGTGGAGCAGGCGAAGGAGGTTAATGTGGAGGGTTTTCATTATGCAGTTTCAAGCAAAAAGGGTCGGCGAGAATTCATGGAGGACACCCACAAAGCCATTGCCAATGTTCTTGGCGATTCCAAGCAGGCCTTC

Ace file of the UniGene sp_v2.0_unigene31857

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein phosphatase 2C 25 [Arabidopsis thaliana] sp\|O80871.1\|P2C25_ARATH RecName: Full=Probable protein phosphatase 2C 25; Short=AtPP2C25; AltName: Full=Protein phosphatase AP2C1 gb\|AAK43913.1\|AF370594_1 putative protein phosphatase 2C [Arabidops	-	-	8.0e-07	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	protein phosphatase	-	-	5.8322e-41	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	5.8322e-41	65%
Blast2go	defense response to fungus	GO:0050832	Biological Process	5.8322e-41	65%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	5.8322e-41	65%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	5.8322e-41	65%
Blast2go	plastid	GO:0009536	Cellular Component	5.8322e-41	65%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWU5

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 117 - 242

Fln protein: PGPVASKTSFVGSGLSPVNRKENLVWTDSGNSSANVRVENG*SKCSSPKLKRKRPQRLDIQLQLPDLNSLFSAVEQAKEVNVEGFHYAVSSKKGRREFMEDTHKAIANVLGDSKQAF

Protein Length: 118

Fln nts: GCCCAGGACCAGTTGCATCAAAAACCAGTTTTGTGGGATCTGGACTGAGCCCTGTGAATAGGAAGGAGAATCTGGTTTGGACGGACAGCGGGAACAGTTCGGCCAATGTCAGGGTGGAGAATGGTTAGAGCAAATGCTCTTCCCCAAAGCTAAAGAGAAAACGTCCGCAGAGATTGGATATTCAGCTCCAGTTGCCGGACCTAAACTCGCTGTTCTCAGCGGTGGAGCAGGCGAAGGAGGTTAATGTGGAGGGTTTTCATTATGCAGTTTCAAGCAAAAAGGGTCGGCGAGAATTCATGGAGGACACCCACAAAGCCATTGCCAATGTTCTTGGCGATTCCAAGCAGGCCTTC

Fln Alignment:

AllPineV4_c15968___KTSFVGSGLSPV--NRKENLVWTDSGNSSA--------NVRVENG*--SKCSSPKLKRKRPQRLDIQLQLPDLNSLFSAVEQAKEVNVEGFHYAVSSKKGRREFMEDTHKAIANVLGDSKQAF
A9NWU5_______________QASFVRSGLSPVLTNSDENLPWSESEKSPVMRAVSLCGNVPEENGSITRKCPSLPLKRKRPQRLDIPLQLPGLNALFSAVEQEMEVNVEGFHYAVSSKKGRREFMEDAHKAIVNVHGDSKRAF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain