SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31757

Length: 1094 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene31757

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] gb\|AAL49784.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20344.1\| unknown protein [Arabidopsis thaliana] gb\|AEE31798.1\| SPla/RYanodine receptor (SPRY) domain-containing pro	-	-	2.0e-22	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	spla ryanodine receptor domain-containing protein	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	CRA domain	IPR013144	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
279	12			87	0.992554
281			12	87	0.992554
282			12	87	0.992554
283		90	10		0.90298
418		14		85	0.993533
426			85	14	0.993533
429			14	85	0.993533
430		14		85	0.993533
807		14	85		0.993534
809		85		14	0.993534
810		85		14	0.993534

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain