SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31403

Length: 325 nt

UniGene Fasta

>sp_v2.0_unigene31403
TGAGGAAGTTGTTGTAGATGCAACAGAAAAGGGGAATGTTGCACGCCTTATTAACCACTCTTGCATGCCGAACTGTTATGCAAGGATCATGAGTATCGATGGTGACGAGAGTCGAATTGTACTAATTGCTAAGAAGAATGTTGCAGCTGGTATGACTATCAATTTGATCCTGAAGAACGTAAAGTTCCATGCCACTGTGGATCATCTGTATGTCGCAAATTCATGAATTAAATATGATATCCAGCCCGTAGAAAGTTTAAATTTTTTCAATGTATGTATCCTCCTTTTGAAAATCAATGCACTCCATTGTTTTCCGTCCCTTCGC

Ace file of the UniGene sp_v2.0_unigene31403

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone methylase n=2 Tax=Andropogoneae RepID=B3VSN3_MAIZE	-	-	4.0e-23	86%
FL-Next	sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%
Blast2go	histone-lysine n-methyltransferase atx4-like	-	-	1.37132e-23	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	1.37132e-23	91%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	1.37132e-23	91%
Blast2go	binding	GO:0005488	Molecular Function	1.37132e-23	91%

Source	InterPros	Term	Type	Identity
Sma3	PWWP	IPR000313	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	ABC transporter, N-terminal	IPR010509	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8GZ42

Fln msg: Separated hits, possible frame ERROR between 148 and 151, your sequence is shorter than subject: 77 - 1043

Fln protein: EEVVVDATEKGNVARLINHSCMPNCYARIMSIDGDESRIVLIAKKNVAxxYDYQFDPEERKVPCHCGSSVCRKFMN*

Protein Length: 78

Fln nts: TGAGGAAGTTGTTGTAGATGCAACAGAAAAGGGGAATGTTGCACGCCTTATTAACCACTCTTGCATGCCGAACTGTTATGCAAGGATCATGAGTATCGATGGTGACGAGAGTCGAATTGTACTAATTGCTAAGAAGAATGTTGCAGCxxxGTATGACTATCAATTTGATCCTGAAGAACGTAAAGTTCCATGCCACTGTGGATCATCTGTATGTCGCAAATTCATGAATTAAATATGATATCCAGCCCGTAGAAAGTTTAAATTTTTTCAATGTATGTATCCTCCTTTTGAAAATCAATGCACTCCATTGTTTTCCGTCCCTTCGC

Fln Alignment:

AllPineV4_c15014___EEVVVDATEKGNVARLINHSCMPNCYARIMSIDGDESRIVLIAKKNVAAxYDYQFDPEER---KVPCHCGSSVCRKFMN
Q8GZ42_______________EEVVVDATEKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTTVASxYDYLFDPDEPDEFKVPCLCKSPNCRKFMN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain