SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31341

Length: 544 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene31341
ATGGGGACGGCCAACATGTGGGATTTGTAGTAGTCCTAATAGAAGTTGAAGTGAGATTCTTGGGATCAATTTCAAGGCTGAATGGACTGACGGCTTCCATTCCAAACATTATATAAACCCCAATACATGTGAATTTGTTAATGCGAGTTTCAGAGTAGTCATTTCCATCCCAAGCTCGGAGAGCTCTGTCTATTGAGGATCCATGTGGCAAACTCGGCTCCAGTCGAGGAAATCTCAAAGCAGGTCAGCAAGAAGATTTTCAGAGTTGAGTTCTGAAGCAAGGCCTCGAGTCTTTTGGCATATCTGGCCATGGCAATGACTAGTTTGAAATTAAGTCCAACATTTCTGGGACCTCATTGCGTGCCAGCAAAGAACACCCAATCCTTTCAAAAGGTTTTGGTGCCAGTAATGGTTAGTCACCAGGGAGAAAATTGTGCAAAAAGGGATCTTCGGCTTCAGGCTGATAAAACTATGTCTCCAATTGTTGAGAACAAGCAACCACATGTTTCTGTGTGTGCAGATGTGCAACTTGCACTGCAAGGGC

Ace file of the UniGene sp_v2.0_unigene31341

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetolactate synthase n=1 Tax=Picea sitchensis RepID=B8LK99_PICSI	-	-	4.0e-12	68%
FL-Next	sp=Acetolactate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	unknown [Picea sitchensis]	-	-	2.86013e-13	75%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Acetolactate synthase, large subunit, biosynthetic	IPR012846	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK99

Fln msg: Distance to subject end: 591 aas, your sequence is shorter than subject: 78 - 669

Fln protein: MAMTSLKLSPTFLGPHCVPAKNTQSFQKVLVPVMVSHQGENCAKRDLRLQADKTMSPIVENKQPHVSVCADVQLALQG

Protein Length: 79

Fln nts: ATGGGGACGGCCAACATGTGGGATTTGTAGTAGTCCTAATAGAAGTTGAAGTGAGATTCTTGGGATCAATTTCAAGGCTGAATGGACTGACGGCTTCCATTCCAAACATTATATAAACCCCAATACATGTGAATTTGTTAATGCGAGTTTCAGAGTAGTCATTTCCATCCCAAGCTCGGAGAGCTCTGTCTATTGAGGATCCATGTGGCAAACTCGGCTCCAGTCGAGGAAATCTCAAAGCAGGTCAGCAAGAAGATTTTCAGAGTTGAGTTCTGAAGCAAGGCCTCGAGTCTTTTGGCATATCTGGCC_-_ATGGCAATGACTAGTTTGAAATTAAGTCCAACATTTCTGGGACCTCATTGCGTGCCAGCAAAGAACACCCAATCCTTTCAAAAGGTTTTGGTGCCAGTAATGGTTAGTCACCAGGGAGAAAATTGTGCAAAAAGGGATCTTCGGCTTCAGGCTGATAAAACTATGTCTCCAATTGTTGAGAACAAGCAACCACATGTTTCTGTGTGTGCAGATGTGCAACTTGCACTGCAAGGGC

Fln Alignment:

AllPineV4_c14869___KLSPTFLGPHCVPAKNTQSFQKVLVPVMVSHQGENCAKRDLRLQADKTMSPIVE
B8LK99_______________KLSPIFPVPHCMPAKNNPSFQKVSLPVKVSHEGTIRTKRGLRLQADKTTAPIVE

SNPs (tot: 4)

Position	A %	C %	G %	Probability
162	25	75		0.996476
230	33		66	0.997452
292	33		66	0.997452
323	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain