SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31330

Length: 483 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene31330
CACGAACTTAAAGGCGTTGATGGCTGGGGGACAAGCGGGGGACGGGCGGGAGCAAGCGTTGCTGAACCACGTCCGGCAGACGGCAGAGAGGGGCAACCCTAAATCTGTGATGGATGCCATTGATTCCTACGGCAGGCGCACCAGCTGGCTCATGAACATCGGCGACGACAAGGGCCCCTTCCTCGACGCAGCCCTCACCAAATACAATCCCAGGGTCGCCCTCGAGATTGGGACGTACTGTGGTTACTCGGCGGTAAGGATCGCGTCGCAGCTACAGAGGCCTGAGAGTGCGCTGCTCGCAGTGGAGATGAGCCCACTCAATTGTCAAATTGCTACTCAAATAATCGACCATGCAGGGTTATCGTCCAAGGTGAGAGTGGTGGAAGGAAAATTCAACGAGCGATTGGACGTTGTCAAGCAATTTCTAGAGGAGAAGGACGCTCCCTTCTTCGATTTCGTTTTGCTGGACCACTGGAAGACATT

Ace file of the UniGene sp_v2.0_unigene31330

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cathechol O-methyltransferase (Fragment) n=5 Tax=Pinus RepID=B0ZR48_PINTA	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	cathechol o-methyltransferase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Catechol O-methyltransferase.	EC:2.1.1.6	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Steroid hormone biosynthesis	00140	72%
Blast2go	Tyrosine metabolism	00350	72%
Blast2go	Betalain biosynthesis	00965	72%
Blast2go	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	response to lipopolysaccharide	GO:0032496	Biological Process	72%
Blast2go	negative regulation of smooth muscle cell proliferation	GO:0048662	Biological Process	72%
Blast2go	estrogen metabolic process	GO:0008210	Biological Process	72%
Blast2go	learning	GO:0007612	Biological Process	72%
Blast2go	positive regulation of homocysteine metabolic process	GO:0050668	Biological Process	72%
Blast2go	female pregnancy	GO:0007565	Biological Process	72%
Blast2go	response to organic cyclic compound	GO:0014070	Biological Process	72%
Blast2go	response to drug	GO:0042493	Biological Process	72%
Blast2go	multicellular organismal reproductive process	GO:0048609	Biological Process	72%
Blast2go	response to pain	GO:0048265	Biological Process	72%
Blast2go	negative regulation of dopamine metabolic process	GO:0045963	Biological Process	72%
Blast2go	catechol O-methyltransferase activity	GO:0016206	Molecular Function	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	72%
Blast2go	membrane fraction	GO:0005624	Cellular Component	72%
Blast2go	cytosol	GO:0005829	Cellular Component	72%
Blast2go	soluble fraction	GO:0005625	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 3	IPR002935	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ07

Fln msg: Distance to subject end: 72 aas, atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 154 - 244

Fln protein: MAGGQAGDGREQALLNHVRQTAERGNPKSVMDAIDSYGRRTSWLMNIGDDKGPFLDAALTKYNPRVALEIGTYCGYSAVRIASQLQRPESALLAVEMSPLNCQIATQIIDHAGLSSKVRVVEGKFNERLDVVKQFLEEKDAPFFDFVLLDHWKT

Protein Length: 155

Fln nts: CACGAACTTAAAGGCGTTG_-_ATGGCTGGGGGACAAGCGGGGGACGGGCGGGAGCAAGCGTTGCTGAACCACGTCCGGCAGACGGCAGAGAGGGGCAACCCTAAATCTGTGATGGATGCCATTGATTCCTACGGCAGGCGCACCAGCTGGCTCATGAACATCGGCGACGACAAGGGCCCCTTCCTCGACGCAGCCCTCACCAAATACAATCCCAGGGTCGCCCTCGAGATTGGGACGTACTGTGGTTACTCGGCGGTAAGGATCGCGTCGCAGCTACAGAGGCCTGAGAGTGCGCTGCTCGCAGTGGAGATGAGCCCACTCAATTGTCAAATTGCTACTCAAATAATCGACCATGCAGGGTTATCGTCCAAGGTGAGAGTGGTGGAAGGAAAATTCAACGAGCGATTGGACGTTGTCAAGCAATTTCTAGAGGAGAAGGACGCTCCCTTCTTCGATTTCGTTTTGCTGGACCACTGGAAGACATT

Fln Alignment:

AllPineV4_c14840___NLKALMAGGQAGDGREQALLNHVRQTAERGNPKSVMDAIDSYGRRTSWLMNIGDDKGPFLDAALTKYNPRVALEIGTYCGYSAVRIASQLQRPESALLAVEMSPLNCQIATQIIDHAGLSSKVRVVEGKFNERLDVVKQFLEEKDAPFFDFVLLDHWK
A9NQ07_______________NLKAFIRTGQAGDGREKALLDHVLQTAEKGNPQSVLEAIDSYSRRTSWLMNIGDDKGPFLDSALGKYNPRVALEIGTYCGYSAVRIASKMQKSGSKLLAVEMSPLNCQIATQIIDHAGLSSKVRVVEGKFDERLDAVKQFLEEMDAPFFDFVFLDHWK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
141	33	66			0.997458
142		66		33	0.997458
143	66		33		0.997458
144			66	33	0.997458
284		33	66		0.997452
417	66		33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain