SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30977

Length: 1166 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene30977

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short-chain type dehydrogenase/reductase n=1 Tax=Picea abies RepID=SDR1_PICAB	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	short-chain type	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA38

Fln msg:

Fln protein: MGMPFSSCGVKPSQDEKRMGMPLEGRVAIVTGASGGIGKDIAIHLAEKGAKVVVHYSSNQQTAEEVVSTINNNNSSSSGDGVKAISCKADIANPSQVAQLFDIAEQTFGSVHILVHCAGVLDAKYPRLAETSVEDWDWTFQVNCKGAFLCSREAANRIVRGGGGRIINLSSSLVGMSRPGYGAYAASKAAVEMMTRILAQELRGTKITANCVAPGPVATDMFFAGKSEALVETIAKAPPLERLGKPEDMAPVVAFLASDEGEWVNAQVVRANGGLI*

Protein Length: 278

Fln nts: GAGAAAAGA_-_ATGGGAATGCCTTTCTCGTCTTGTGGGGTAAAGCCCAGCCAAGACGAGAAAAGAATGGGAATGCCTTTAGAAGGGCGAGTTGCCATCGTGACAGGTGCGTCTGGCGGGATCGGCAAGGATATCGCCATCCATTTAGCAGAGAAGGGAGCCAAAGTGGTCGTCCATTACTCCTCTAATCAACAGACCGCAGAGGAGGTGGTCTCCACCATTAATAATAATAACTCCTCTTCTTCTGGTGATGGTGTGAAGGCGATTTCCTGCAAGGCCGACATCGCAAACCCTTCCCAGGTCGCCCAGCTATTCGACATAGCCGAGCAGACTTTTGGGTCCGTTCACATCTTGGTGCACTGTGCAGGAGTGTTGGACGCCAAGTATCCACGGCTCGCGGAAACCTCCGTGGAAGACTGGGACTGGACTTTCCAAGTGAACTGCAAGGGAGCGTTTCTTTGTAGCAGAGAAGCCGCCAACAGAATCGTCCGCGGTGGTGGTGGTCGCATCATCAACCTAAGCAGTTCCTTGGTGGGAATGTCGAGACCGGGGTATGGCgCATACGCTGCCAGTAAGGCGGCAGTGGAGaTGATGACGCGAAtCCTTGCGCAGGAGCTGCGGGGCACTAAGATTACAGCAAATTGTGTGGCCCCAGGCCCTGTTGCCACCGATATGTTCTTTGCTGGGAAGAGCGAGGCCCTGGTCGAAACGATTGCTAAAGCGCCCCCCCTGGAGCGGTTGGGGAAACCGGAGGATATGGCTCCGGTGGTTGCCTTCCTGGCGAGCGACGAAGGAGAGTGGGTTAATGCTCAGGTTGTTCGGGCCAATGGAGGCCTGATATGA___TTCATGATTTTTCAACCCCAAAAGGCCTGTCCAGCGTCTCCCACATCGTTAGTTTACTAGGTTCTTCTATTCCAGCCAAATCTTGTTCCGCTTGGGCCAGAtATTGGACGATTTCTGTTCCCAAAATAAACTGGATTTTGTTCACTGTACTGTACCGTGTTTTCAGACCTCAATGTGCTTGTTTTTTCTAATGTCTTTGAAAAAGGCCACTTAcGTTGTAATGATTTTCTAGGTAGTGAGCTTTTGGATTTGACCTTGGTCTCTGTTTTGTGACTAATATGATGTTCACTGGACTTAATAGGTTGCTGTGCTTGAATAGGCAATAG

Fln Alignment:

AllPineV4_c13924___MGMPLEGRVAIVTGASGGIGKDIAIHLAEKGAKVVVHYSSNQQTAEEVVSTIXXXXXXXXGDGVKAISCKADIANPSQVAQLFDIAEQTFGSVHILVHCAGVLDAKYPRLAETSVEDWDWTFQVNCKGAFLCSREAANXXXXXXXXXXXNLSSSLVGMSRPGYGAYAASKAAVEMMTRILAQELRGTKITANCVAPGPVATDMFFAGKSEALVETIAKAPPLERLGKPEDMAPVVAFLASDEGEWVNAQVVRANGGLI
D5AA38_______________MAMPLEGRVAIVTGASSGIGKEIALHLAEKGAKVVVHYSSNQGTAEEVASTINNLVSS--GDGVRAIVCKADVAEPSQVAQLFDMAEHTFGPPHIVVNNAGVIDTKYPTLAQTSDEEWDRIFQVNCKGTFLCSREAAKRVVRGGGGRIINLSSSLVGVPTPGFGAYTASKAAVEMMTRILAQELRGTQITANVVAPGPVATDMFFVGRSEALIEAMTKSSPFERVGKVEDVAPVVAFLASEEGEWVNAQVVRVNGGRV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
849	25			75	0.996473
943	60			40	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
219	230	TAA TAA TAA TAA	12
490	501	GGT GGT GGT GGT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain