SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30475

Length: 605 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene30475

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9RIL0_RICCO	-	-	9.0e-21	66%
FL-Next	tr=Trehalose-6-phosphate synthase, putative; Ricinus communis (Castor bean).	-	-	0.0	66%
Blast2go	trehalose-6-phosphate phosphatase	-	-	1.08631e-23	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Trehalose-phosphatase.	EC:3.1.3.12	-	1.08631e-23	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		1.08631e-23	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	trehalose biosynthetic process	GO:0005992	Biological Process	1.08631e-23	82%
Blast2go	trehalose-phosphatase activity	GO:0004805	Molecular Function	1.08631e-23	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
248		40		60	1.0
249	60		40		1.0
251	60	40			1.0
252	60		40		1.0
256	60	40			1.0
259	50			50	1.0
260			75	25	0.996473
262		25	75		0.996473
263		25		75	0.996473
268		75	25		0.996473
272		25	75		0.996473
275			75	25	0.996473
491		66	33		0.997452
571		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain