SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene30181

Length: 955 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene30181

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RUJ6_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	aaa-type atpase family protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	0.0	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3		IPR001984	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase-like, arabidopsis	IPR007942	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D7

Fln msg: your sequence is shorter than subject: 234 - 478

Fln protein: TGKSSMIAAMANFLDYDIYDLELTQVKNNAALRKLLIATTNKSIIVIEDIDCSLDLSDRKKKKKKPQKDGEEDEKPPEPDKADEIEANQDSKVTLSGVLNFTDGLWSCCGSERLFVFTTNYIDRLDPALLRSGRMDKHILLSFCTFGAFKVLARNYLSIEDHELFPQIQDLMETAQMTPADVTEHLMKMTDHHPTTALQNLIQALREAKERIATAALKRISEENACATVQGQE*

Protein Length: 235

Fln nts: GAACTGGCAAGTCCAGTATGATTGCTGCCATGGCTAACTTTCTGGATTACGACATCTACGACCTGGAGCTGACCCAAGTGAAGAACAATGCGGCACTGAGGAAGCTTCTCATCGCCACCACCAACAAATCGATAATTGTGATCGAAGATATCGACTGTTCTCTCGATCTCTCTGATCGCAAGAAGAAGAAGAAGAAGCCACAGAAAGATGGCGAGGAGGACGAGAAGCCGCCGGAGCCTGACAAAGCGGATGAGATCGAAGCGAATCAGGACAGCAAAGTGACCCTCTCGGGAGTTCTGAATTTCACGGACGGGTTGTGGTCGTGTTGCGGAAGCGAGAGATTATTCGTTTTCACCACCAACTACATTGACAGGCTCGACCCGGCGCTTCTCCGGTCTGGTCGGATGGACAAACACATTCTCCTCTCATTCTGCACTTTTGGGGCATTCAAGGTTCTTGCGCGCAATTACCTCTCCATTGAAGACCATGAGCTGTTTCCCCAGATCCAGGATCTGATGGAGACCGCTCAGATGACGCCTGCGGATGTAACGGAACATCTAATGAAAATGACAGATCATCATCCCACCACTGCCCTCCAGAACCTAATTCAAGCTCTTCGAGAGGCCAAAGAAAGAATCGCTACTGCCGCTTTGAAGCGCATATCAGAAGAAAACGCTTGTGCAACAGTACAGGGCCAAGAATAA___TGTCAGCAAAGTCGTTGCAGACATCAATCCTTCCTTAGATCTTCGACATCCACTAGAGTTTATCAGTCGCAGAGTAGAATTACTCAGGTAATATTCGAAATTTCTTTCCTAGTACTAGAAGTTTGAAGTTTAACTATAATCTGTACTCTGTTTTTTCTCCTTCTTGTAATTTAATTTACTAGTCTCTGGTCTTGTTTCCTTTGAAATTTTGTGCCTATAAAGCAGTTTTTGTGCAGAGAAACCATACATAC

Fln Alignment:

AllPineV4_c11726___TGKSSMIAAMANFLDYDIYDLELTQVKNNAALRKLLIATTNKSIIVIEDIDCSLDLSDRXXXXXXXXXXXXXXXXXXXXXXXXXXXANQDSKVTLSGVLNFTDGLWSCCGSERLFVFTTNYIDRLDPALLRSGRMDKHILLSFCTFGAFKVLARNYLSIEDHELFPQIQDLMETAQMTPADVTEHLMKMTDHHPTTALQNLIQALREAKERIATAALKRISEENACATVQGQ
D5A9D7_______________TGKSSMIAAMANFLDYDIYDLELTQVKNNTELRKLLFTTTNKSIIVIEDIDCSLDLSDRKKKKKPQKDGEEDEKPSKPGKPDERE-SNEDSKVTLSGVLNFTDGLWSCCGSERLFVFTTNHVDRLDPALLRSGRMDKHILLTFCTFGAFKILARNYLSIEDHELFPDIGDLTEAAQMTPADVTEHLMKMAD-HPSRALENLIQALREAKERIATAALKGISEENASAT-EGQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
640	72			27	1.0
752		70		30	1.0
791		66		33	1.0
843	83		16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
180	197	AAG AAG AAG AAG AAG AAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain