SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29859

Length: 570 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene29859
CACTTTTGCCAAAAGCCTTGGAGTCAGCAGTTGTGTTGGATGTTCAGAATATTGCCTGTGGAAGCAGACATGCTGCTTTGGTCACGAAGCAGGGAGAGGTCTTCTGCTGGGGAGAGGAATCAGGAGGTCGACTTGGCCATGGAGTAGATGTAGATGCTCCACATCCAAAACTAGTTGAGGCTCTTGCAAACACTAACATTGAGCTTGTAGCATGTGGGGAGTATCATACTTGTGCTGTTACACTTTCAGGTGATTTGTATACATGGGGAAATGGCACTCATAATTTTGGGATTCTTGGACATGGAAATGAAGTGAGCCACTGGGTTCCGAGAAAGGTTAATGGACCTTTAGAGGGAATTCACATATCTTCAATATCTTGTGGGCCATGGCATACTGCTGCAGTAACTTCTGCAGGTCAGTTGTTTACATTTGGTGATGGAACATTTGGTGTTTTAGGTCATGGAGACCATAAAAGTGCTGCTTCACCCCGGGAAGTATTATCACTTAAAGGATTACGGACTGTAAGAGCAGCTTGTGGAGTGTGGCACACTGCTGCAGTAGTGGAAGTTT

Ace file of the UniGene sp_v2.0_unigene29859

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ran GTPase binding protein, putative n=3 Tax=rosids RepID=B9SM24_RICCO	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	ran gtpase binding	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACQ2

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 189 - 243

Fln protein: LLPKALESAVVLDVQNIACGSRHAALVTKQGEVFCWGEESGGRLGHGVDVDAPHPKLVEALANTNIELVACGEYHTCAVTLSGDLYTWGNGTHNFGILGHGNEVSHWVPRKVNGPLEGIHISSISCGPWHTAAVTSAGQLFTFGDGTFGVLGHGDHKSAASPREVLSLKGLRTVRAACGVWHTAAVVEV

Protein Length: 190

Fln nts: CACTTTTGCCAAAAGCCTTGGAGTCAGCAGTTGTGTTGGATGTTCAGAATATTGCCTGTGGAAGCAGACATGCTGCTTTGGTCACGAAGCAGGGAGAGGTCTTCTGCTGGGGAGAGGAATCAGGAGGTCGACTTGGCCATGGAGTAGATGTAGATGCTCCACATCCAAAACTAGTTGAGGCTCTTGCAAACACTAACATTGAGCTTGTAGCATGTGGGGAGTATCATACTTGTGCTGTTACACTTTCAGGTGATTTGTATACATGGGGAAATGGCACTCATAATTTTGGGATTCTTGGACATGGAAATGAAGTGAGCCACTGGGTTCCGAGAAAGGTTAATGGACCTTTAGAGGGAATTCACATATCTTCAATATCTTGTGGGCCATGGCATACTGCTGCAGTAACTTCTGCAGGTCAGTTGTTTACATTTGGTGATGGAACATTTGGTGTTTTAGGTCATGGAGACCATAAAAGTGCTGCTTCACCCCGGGAAGTATTATCACTTAAAGGATTACGGACTGTAAGAGCAGCTTGTGGAGTGTGGCACACTGCTGCAGTAGTGGAAGTTT

Fln Alignment:

AllPineV4_c10733___PKALESAVVLDVQNIACGSRHAALVTKQGEVFCWGEESGGRLGHGVDVDAPHPKLVEALANTNIELVACGEYHTCAVTLSGDLYTWGNGTHNFGILGHGNEVSHWVPRKVNGPLEGIHISSISCGPWHTAAVTSAGQLFTFG----DGTF--------GVLGHGDHKSAASPREVLSLKGLRTVRAACGVWHTAAVVE
D5ACQ2_______________PKLIKYLEGIKVCKIAAGLLHSSCIDENGTVFTFGQGRMYQLGLGHMKDSSVPSIVKDLPF--VQQVACGGYHTCAISSSGDLYTWGSSEN--GCLGLGSKSLAPSPERVEGSLLPLHVSEVSCG-WKHTAVISGGNVFTWGWGGSNGTFSDDGFSSGGQLGLGNDFDYLEPSRVQFDRNFQALQISCGFNHTAAIFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain