SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29528

Length: 517 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene29528
TTAGCATCAAGGTGTAATTCGGTTGATACCATTTTAGAAATGGATAGAATCTTGAGGCCACAAGGATGGGTTATAGTGCGTGATACTGCCATGATTGTCAAGCAGTTATTACCTGTCATGCAATCCTTACATTGGCGCGTGACTTTTGCTGTCACGCAGACGGAAGAAAATCTTATTGTTGCCCAGAAGGGTAGTTGGCGTCCTGAGACAAAAAAAGTCCTCGCTTGATTGTGGTGGGATGGAATTAAGGATTTAGATTCGTTTTTCAACTAACATGGAATGACCATTATGCCTCCGACGCACATAAAGCCCTGCTCCAAGAATAGGGAAATCTAGAGGCTGATCATGTCTGATAAAAGAGGCATTCAACCCGTCACGATGTTTCAGTGATTTACTAATGATGCAGGTCGGCCAATTTTTGAAATTTATCAAAATACAATTAAGCTGTGCCTTTGCCTAAACTAAATATTGGAGCATTGATTATTCTTCAAGTTAGAAGATAGACAAAGTCGACCTT

Ace file of the UniGene sp_v2.0_unigene29528

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative methyltransferase PMT27 [Arabidopsis thaliana] sp\|Q9SD39.1\|PMTR_ARATH RecName: Full=Probable methyltransferase PMT27 emb\|CAB62629.1\| putative protein [Arabidopsis thaliana] gb\|AEE78746.1\| putative methyltransferase PMT27 [Arabidopsis thaliana]	-	-	1.0e-11	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	protein	-	-	5.98823e-16	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	5.98823e-16	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXM2

Fln msg: your sequence is shorter than subject: 76 - 601

Fln protein: LASRCNSVDTILEMDRILRPQGWVIVRDTAMIVKQLLPVMQSLHWRVTFAVTQTEENLIVAQKGSWRPETKKVLA*

Protein Length: 77

Fln nts: TTAGCATCAAGGTGTAATTCGGTTGATACCATTTTAGAAATGGATAGAATCTTGAGGCCACAAGGATGGGTTATAGTGCGTGATACTGCCATGATTGTCAAGCAGTTATTACCTGTCATGCAATCCTTACATTGGCGCGTGACTTTTGCTGTCACGCAGACGGAAGAAAATCTTATTGTTGCCCAGAAGGGTAGTTGGCGTCCTGAGACAAAAAAAGTCCTCGCTTGA___TTGTGGTGGGATGGAATTAAGGATTTAGATTCGTTTTTCAACTAACATGGAATGACCATTATGCCTCCGACGCACATAAAGCCCTGCTCCAAGAATAGGGAAATCTAGAGGCTGATCATGTCTGATAAAAGAGGCATTCAACCCGTCACGATGTTTCAGTGATTTACTAATGATGCAGGTCGGCCAATTTTTGAAATTTATCAAAATACAATTAAGCTGTGCCTTTGCCTAAACTAAATATTGGAGCATTGATTATTCTTCAAGTTAGAAGATAGACAAAGTCGACCTT

Fln Alignment:

AllPineV4_c9647___RCNSVDTILEMDRILRPQGWVIVRDTAMIVKQLLPVMQSLHWRVTFAVTQTEEN----LIVAQKGSW
A9NXM2_______________RCSLVDLMIEMDRILRPEGTVVVRDTPKVIDRVAKIASAIHWSTEVYDTEPESNGKEKLLVATKQFW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain