SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29415

Length: 1441 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29415 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylyl cyclase-associated protein n=1 Tax=Populus trichocarpa RepID=B9H0Q2_POPTR	-	-	67%
FL-Next	sp=Adenylyl cyclase-associated protein; Vitis vinifera (Grape).	-	-	69%
Blast2go	adenylyl cyclase-associated	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	0.0	79%
Blast2go	actin binding	GO:0003779	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate cyclase-associated CAP	IPR001837	-	-
Sma3	CARP motif	IPR006599	-	-
Sma3	Adenylate cyclase-associated CAP, C-terminal	IPR013912	-	-
Sma3	Adenylate cyclase-associated CAP, N-terminal	IPR013992	-	-
Sma3	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	IPR016098	-	-
Sma3	C-CAP/cofactor C-like domain	IPR017901	-	-
Sma3	CAP, conserved site	IPR018106	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TQ10

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 388 - 472

Fln protein: VVTLAVTQSRRFDKDDSAS*PRLIKANVLTEGRRTESFNHLKTVAESLTALAWVTYTGKECGLSLPAAHVEESWQTAEFYNNKVLVEYKNKDSNHVEWAKAMKELYVPGLRDFVRKFYPQGPVWNTVGVDSTIPVSATAGKSGARPPPPPPPPLPTFESTEAAQSSKEGMSAVFQEISRGESVTAGLKKVTDEMKTKNRPDRSGAVPVSAGKDKSGTSGHSFSKTGPPKLELQMGRKWVVENQIGKKNLVIEDCDPKQSVYVFGCKDSVLLIKGKVNNITVDKCTKTGVVFTDVVSACEIVNCNRIEVQCQGTAPTVAIDNTSGCQLYLSKASLRASITTAKSSEVNVLVPGASDDADLIEHSLPEQFNHTFKDGSFVTSAVSHSGG*

Protein Length: 389

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCGAAGGTTTGACAAAGATGATTCAGCGTCGTGACCAAGGCTTATAAAGGCAAATGTTTTAACAGAAGGAAGGAGAACTGAATCTTTCAACCACTTAAAGACTGTTGCAGAGAGCTTGACAGCACTAGCATGGGTTACCTATACTGGGAAAGAGTGCGGACTGAGCCTTCCTGCTGCTCACGTGGAAGAAAGCTGGCAAACTGCAGAGTTCTATAATAACAAGGTTCTTGTTGAATACAAAAATAAAGATAGCAACCATGTTGAGTGGGCGAAGGCTATGAAGGAACTTTATGTGCCAGGGCTGAGGGACTTTGTGAGGAAATTCTATCCTCAGGGACCTGTTTGGAATACTGTGGGGGTTGATTCAACCATTCCTGTTTCAGCAACAGCTGGAAAATCTGGGGCTCGTCCTCCACCTCCCCCGCCACCACCACTGCCAACGTTTGAGTCTACAGAAGCAGCACAAAGCTCAAAAGAAGGAATGAGTGCTGTATTTCAAGAGATCAGCAGAGGAGAATCTGTAACTGCAGGCTTGAAAAAGGTGACAGATGAAATGAAGACGAAAAATCGCCCTGATAGATCAGGAGCTGTTCCTGTGTCGGCTGGGAAGGATAAGAGTGGTACTAGTGGCCATTCATTTTCTAAAACAGGGCCTCCCAAACTTGAGCTACAAATGGGTCGCAAATGGGTTGTTGAGAATCAAATTGGTAAGAAGAACCTGGTCATAGAAGATTGTGATCCAAAACAGTCAGTGTACGTTTTTGGCTGCAAAGATTCTGTTTTGCTAATAAAAGGCAAAGTTAACAATATTACTGTTGACAAATGCACGAAGACAGGAGTTGTCTTTACGGATGTTGTGTCAGCTTGCGAGATAGTGAACTGTAACCGTATTGAGGTGCAATGTCAGGGTACAGCTCCAACTGTTGCTATTGACAACACATCTGGATGCCAGCTATACCTAAGTAAAGCCTCTCTACGTGCATCTATTACAACAGCTAAGTCAAGTGAAGTTAATGTGCTAGTACCTGGCGCAAGTGATGATGCGGATTTGATTGAACATTCCCTGCCTGAGCAATTCAATCATACGTTCAAGGATGGAAGCTTTGTTACTTCTGCCGTATCACACTCCGGTGGTTAA___TTTTGTAGTGTGCAGTCAATTCATATCGGTTTACTTAGTGATTTAAACTCCATTTATGTTGCGGCGTGTGAGTTTGCTATGTGCTTCTTGGGAGCTTGCTGTTAACACCCACAGGGATGGTTTGCATTGAACGGTTTTTTTAGTGAGTACATCATTTATGAGTGTAATCTGACATTATTCCATAATGCGGGGGTTTTTGTAAGGGCTGAGAGTCAATCTGGTTCATATTAATAATAGAAGTTGTTTTACAACCACTATTGCATGTCTTGAAAAAAA

Fln Alignment:

AllPineV4_c9205___LIKANVLTEGRRTESFNHLKTVAESLTALAWVTYTGKECGLSLPAAHVEESWQTAEFYNNKVLVEYKNKDSNHVEWAKAMKELYVPGLRDFVRKFYPQGPVWNTVGVDSTIPVSATAGKSGARXXXXXXXXXPTFESTEAAQSS-KEGMSAVFQEISRGESVTAGLKKVTDEMKTKNRPDRSGAVPVSAGKDKSGTSGHSFSKTGPPKLELQMGRKWVVENQIGKKNLVIEDCDPKQSVYVFGCKDSVLLIKGKVNNITVDKCTKTGVVFTDVVSACEIVNCNRIEVQCQGTAPTVAIDNTSGCQLYLSKASLRASITTAKSSEVNVLVPGASDDADLIEHSLPEQFNHTFKDGSFVTSAVSHSGG
D7TQ10_______________IMKANALTEGRRSDFFNHLKTAADSLTALAWIAYTGKDCGMSLPIAHVEESWQMAEFYNNKILVEYKTKDPNHVEWAKALKELYVPGLRDYVKRFYPLGPVWNPTGKTTASAPPKAPGPSAPAPPPPPPASLFSSEPSQASSSRPKEGMAAVFQEINSGKPATSGLRKVTDDMKTKNRADRSGVV--GAGQKEGRVSSPSFSKAGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVYGCKDSVLKIQGKVNNITIDKCTKMGIVFADVVAACEVVNCNSVEVQCQGSAPTISVDNTAGCQLYLGKDALEASITTAKSSEINVLVPGAEPDGDWGEHALPQQYIHVFKDGQFVTTPVSHSGG

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1006	33			66	0.997452
1007	33		66		0.997452
1022		33	66		0.997476
1291	83		16		0.999991
1383		20		80	0.995493
1385			66	33	1.0
1386	16	50	33		1.0
1387	33	66			1.0
1388	16		33	50	1.0
1390			33	66	1.0
1393	60	40			1.0
1399	40			40	1.0
1400	40			40	1.0
1401		33	33	33	0.997753
1402			75	25	0.996483
1404		66		33	0.997452
1406	33	66			0.997476
1408	66			33	0.997476
1409		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain