SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29357

Length: 350 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene29357
AATGTTGGTGAATAGGGTTTATTCGCTTCCTCCATTTCATGGTGTGCTCCAGGGAGAAATTTTCCTTCAAAATTTACCAAGCATTATAACTGCTCTTGTACTTGATCCAAAACCAGGAGAGAGAATATTAGACATGTGTGCTGCTCCTGGTGGAAAAACAACTGCAATTGCAATGCTTATGGAAGATAAAGGGGAGGTCATTGCAGTTGATCGCTCCCATAATAAGGTGGAAGATATTCATAATCTAACTCGGGAGATGGGCTTAACATGTGTGCATCCATATAAACTGGATGCTCTAAAAGCTGTCAAGCAGGTTGATTCCTATGATGATGAGTGCTCCTCCTTATCAA

Ace file of the UniGene sp_v2.0_unigene29357 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NOP2/Sun domain family, member 6 [Xenopus (Silurana) tropicalis] gb\|AAH81330.1\| nsun6 protein [Xenopus (Silurana) tropicalis]	-	-	7.0e-24	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	methyltransferase nsun6-like	-	-	1.54143e-44	80%

Source	InterPros	Term	Type	Identity
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	IPR018314	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU4

Fln msg: Distance to subject end: 258 aas, your sequence is shorter than subject: 116 - 641

Fln protein: MLVNRVYSLPPFHGVLQGEIFLQNLPSIITALVLDPKPGERILDMCAAPGGKTTAIAMLMEDKGEVIAVDRSHNKVEDIHNLTREMGLTCVHPYKLDALKAVKQVDSYDDECSSLS

Protein Length: 117

Fln nts: AATGTTGGTGAATAGGGTTTATTCGCTTCCTCCATTTCATGGTGTGCTCCAGGGAGAAATTTTCCTTCAAAATTTACCAAGCATTATAACTGCTCTTGTACTTGATCCAAAACCAGGAGAGAGAATATTAGACATGTGTGCTGCTCCTGGTGGAAAAACAACTGCAATTGCAATGCTTATGGAAGATAAAGGGGAGGTCATTGCAGTTGATCGCTCCCATAATAAGGTGGAAGATATTCATAATCTAACTCGGGAGATGGGCTTAACATGTGTGCATCCATATAAACTGGATGCTCTAAAAGCTGTCAAGCAGGTTGATTCCTATGATGATGAGTGCTCCTCCTTATCAA

Fln Alignment:

AllPineV4_c8988___LQGEIFLQNLPSIITALVLDPKPGERILDMCAAPGGKTTAIAMLMEDKGEVIAVDRSHNKVEDIHNLTREMGLT
B8LRU4_______________MAGHYMLQSASSFLPVMALAPQEKERVLDMAAAPGGKTTYIAALMKNTGIIYANELKNSRLKSLSANIHRMGVT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
272		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain