SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29292

Length: 1583 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29292

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam05495, zf-CHY, CHY zinc finger	-	-	6.0e-29	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	zinc finger	-	-	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Homeobox protein, antennapedia type, conserved site	IPR001827	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Proteinase inhibitor I1, Kazal	IPR002350	-	-
Sma3	Zinc finger, MIZ-type	IPR004181	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Haemerythrin/HHE cation-binding motif	IPR012312	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg:

Fln protein: MQNLMTSRWIAAQQKLPQSRASQSGNGEDTPGRCLSYRDSDQKIFGCEHYKRNCKLKAACCNQLFTCRFCHDKVSDHSMDRKATKEMMCMKCLQIQPVASNCVTPSCKGFSMAQYFCNICKFFDDEREVYHCPFCNLCRVGKGLGIDFFHCMTCNCCMSKTLAMHKCREKGLESNCPICSDFLFTSSAPVKSLPCGHFMHSACFQAYTCSNYTCPICSKSLGDMGVYFGMLDALLSAEELPEEYQGRIQDILCNDCQKKEQLPFIGYITSVLHAGHTTQG*

Protein Length: 282

Fln nts: ATGGGATAGCTAGCTAGATAATTAGATAGATGAACTGATAGATGATGTTCATTTAATTTGTAAATGTTTGAATCAGTAAGCTTAATGGCATAATACTGTTACGTTGTTATATGGACATAGGGCAAACTATTCATGAAAGTATTGAGCAAGGCAATCAGAAATTCAAGCCTGGGTGGAAAGATATTTTCCGCATGAATCAAAAAAGAGCTTGAATCTGCAATACGCAAGGTGTCAAGTGATGCTTCACTTGATCCACGTCAAAAAGCATATCTT_-_ATGCAGAACCTTATGACCAGTCGGTGGATTGCTGCCCAGCAGAAGTTGCCACAGTCAAGAGCCAGTCAGTCTGGGAATGGTGAAGACACACCTGGGCGCTGTCTCTCATATCGAGATTCAGATCAGAAAATATTTGGATGTGAGCATTACAAGAGGAACTGCAAACTAAAAGCTGCTTGTTGTAACCAACTTTTCACCTGTAGATTTTGCCATGATAAAGTTAGTGACCACTCAATGGACAGGAAAGCAACAAAAGAGATGATGTGCATGAAATGCTTGCAGATTCAGCCTGTTGCTTCAAATTGTGTTACTCCTTCCTGCAAAGGATTTTCTATGGCACAGTATTTCTGCAATATTTGCAAGTTTTTTGATGATGAAAGAGAAGTATACCATTGCCCATTCTGCAATTTATGTCGTGTTGGAAAAGGACTCGGTATTGATTTCTTCCATTGCATGACTTGCAATTGTTGTATGTCAAAGACACTGGCAATGCATAAATGTCGAGAAAAGGGGCTTGAGTCAAACTGCCCAATATGCAGTGACTTCCTCTTCACTTCTAGTGCCCCAGTGAAATCTCTTCCTTGTGGCCACTTTATGCATTCAGCTTGTTTCCAGGCATACACCTGCAGTAATTATACATGCCCAATATGTAGCAAGTCGTTGGGAGACATGGGTGTATATTTTGGCATGCTTGATGCTTTGTTGTCGGCAGAAGAGCTCCCTGAGGAATATCAAGGGCGGATTCAGGATATTCTCTGTAATGATTGTCAAAAAAAGGAACAGCTCCCTTTCATTGGTTATATCACAAGTGTACTACATGCGGGTCATACAACACAAGGGTGA___TTTAAATTTTGGTTATGTTTGACTAATATTTGCTGAAGCTTATAGCCAGATGCCTTACGTGATAGCTCCAAAAATTACGATGTATTTACAGAAAGAAAAAAGTAAGGGTTCACTTTGTTAATGACAAGTGCATCCACCGTAAAATTGAAAAATAGAATCTGTAGAATGGGTTGGAAATGGAGCCAAGAATCCGATGTATATGATGTTCTCTATTCTGGAATTTAAGGTCTTGCAGGCCACTCGAGCACTAGAAATGGTTATACGGAATATGCAATTACAGTTGTACGAGTGTATATTGTGCAGAATGGTGTCATTGTCGAATCTGGATGCACGTGTGCAAGATTCTGTTTTTGCAGGCCTTCTATTGTTATTTTTTGGTAGTTAGTGATTCATTACGGAATCGCAAATTAACTGTAATATATGTAATCATTTACAATGGCATCATGAAATGTATATTTCAAAGTATT

Fln Alignment:

AllPineV4_c8778___GCEHYKRNCKLKAACCNQLFTCRFCHDKVSDHSMDRKATKEM--------MCMKCLQIQPVASNCVTPSCKGFSMAQYFCNICKFFDDE--REVYHCPFCNLCRVGKGLGID-FFHCMTCNCCMSKTL-AMHKCREKGLESNCPICSDFLFTSSAPVKSLPCGHFMHSACF-QAYTCSNYTCPICSKSLGDMGVYFGMLDALLSAEELPEEYQGRIQDILCNDCQKKEQLPF
D5A9X0_______________GCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLKDPKQRHELPRYKVERVICSLCDTEQNV--NQVCENC-GVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVG---GRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQF

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
571		20		80	0.995493
583		20		80	0.995493
861	22			77	0.999999
863	22	77			0.999999
885	83			16	0.994512
952		88		11	0.991528
959	10			90	0.90298
960	10		90		0.90298
962	90		10		0.90298
966		10		90	0.90298
1066	88		11		0.991528
1067		90	10		0.90298
1068	90		10		0.90298
1187		77		22	0.999999
1192		44		55	1.0
1251		25		75	0.996473
1270	20		80		0.9955

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain