SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28639

Length: 813 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28639

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIR/NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J1_PINTA	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	tir nbs	-	-	66%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Overlapping hits, possible frame ERROR between 140 and 134, Distance to subject end: 469 aas, your sequence is shorter than subject: 270 - 1071

Fln protein: DASQMDALLSFRAFLDPDSLILATTRDKHVLISSGVLESSIYSxxxxSQLHSTELFCRYALNQPSPSQEFADLTDRFVKACDGLPLLLKVLGALVCGRCESYWEAILDELDRRLPNTEIEKSLKISYDSLSSDDQQIFLDIASLFIGEERDLAIRIWGLRGFQNLQDKCLLDVDAENSIRMHDHIRDLARNIAQGLGTRRLWQQSIKDIDDLLEQSSHIMTQVRGITMPGCHFSEWESLEMGLGTRLGWQQSMEDIDDLLEQFSHRMTEV

Protein Length: 271

Fln nts: ATGATGCCTCTCAAATGGACGCGCTTTTGTCATTTAGGGCTTTCCTTGACCCTGATAGCTTGATTTTGGCTACCACCAGGGACAAACATGTCCTCATAAGCTCAGGAGTGTTAGAGTCCTCAATTTATAGTxxxxxxxxxxxxAGTCAATTACACTCCACAGAGCTCTTCTGTCGCTATGCCTTGAATCAGCCATCCCCATCACAAGAATTTGCAGACCTGACAGATCGATTTGTGAAAGCCTGCGATGGGTTGCCGTTGTTGCTGAAAGTATTAGGGGCACTTGTTTGCGGGCGATGTGAATCTTACTGGGAAGCTATACTAGATGAACTTGACAGGAGACTGCCTAACACTGAGATAGAGAAAAGCCTAAAAATAAGTTACGACTCGCTCAGTTCAGATGATCAGCAAATATTTTTAGATATTGCCTCACTTTTCATAGGAGAAGAAAGAGATCTTGCTATAAGAATATGGGGTTTGCGGGGGTTCCAAAATCTACAGGACAAGTGTTTGTTGGATGTGGACGCAGAAAATAGTATAAGAATGCATGATCACATTCGTGACCTGGCAAGAAATATTGCGCAGGGATTAGGGACCCGTCGTCTTTGGCAGCAATCCATCAAAGACATTGATGATTTGCTGGAGCAATCCTCACATATAATGACCCAAGTTCGCGGGATTACCATGCCTGGTTGTCATTTTTCTGAATGGGAGTCGTTAGAAATGGGATTAGGGACCCGTCTGGGTTGGCAGCAATCCATGGAAGACATTGATGATTTGCTGGAGCAATTCTCACATAGAATGACGGAAGTTCC

Fln Alignment:

AllPineV4_c5640___DASQMDALL-SFRAFLDPDSLILATTRDKHVLISSGVLESSIYSLxxLSQLHSTELFCRYALNQPSPSQEFADLTDRFVKACDXXXXXXXXXXXXXCGRCESYWEAILDELDRRLPNTEIEKSLKISYDSLSSDDQQIFLDIASLFIGEERDLAIRIW-GLRGFQNLQDKCLLDVDAENSIRMHDHIRDLARNIAQGLG-TRRLWQQSIKDIDDLLEQSSHIMTQVRGITM
C0PQE2_______________DISQLDALFASLKDTIHVDSLILVTSRNKDVLTSSGITESSIYRLxxLNRKHSQELFCFHAFGQPHPVVGFEEVVEKFLDVCDGLPLSLKVLGALLHGKDLWYWKEQLGKTSTILPR-KVRSTLEISFDALDKQEKEVFLDIACFFIGENRD-TIRIWDGWLNLENLKNRCLVEVDSENCLRMHDHLRDLGRDLAENSEYPRRIWRMT----DSLLHNVSD-QSPVRGISM

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
215		75		25	0.99649
219		66		33	0.997452
291		75		25	0.996479
320		25		75	0.99649
346		75		25	0.996483
454		33	66		0.997452
457		66	33		0.997453
507	33		66		0.997452
556	75			25	0.996474
564		75		25	0.996473
603		33		66	0.997476
617	33	33		33	0.997584
620	33		33	33	0.997753
622	33	33	33		0.997584
657			25	75	0.996486
665	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain