SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28594

Length: 1739 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28594 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana] gb\|AAK76703.1\| unknown protein [Arabidopsis thaliana] gb\|AEE86709.1\| PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	44%
Blast2go	uncharacterized membrane protein yol092w-like	-	-	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystinosin/ERS1p repeat	IPR006603	-	0.0	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9T4V4

Fln msg: your sequence is longer than subject: 431 - 377

Fln protein: MADCVFGGSCVWLLEKYLQNSLGRVRDYVSLVFGLISVFSWAVAEIPQIVTNFKSGSTEGVSLAFLMTWVVGDLFNVIGCLLEPTTLPTQLYTALVYTITTVVLVWQTAYYDYIRKWWKSRKAKPSPEKEECGSEGRFENIEPVKIAESMDYSAKQGRGNGVDLPNRLSNGTPASSLPIPTISPARDTSIGKSLYYTSARSLASSHTPTPGSYLVASSRGSGRSGPSFILNQSSVDDEGLLANIESTSPKKSKTMLRSVVATSFFIVWLNFFHLQAIPTFDSAQIDTSAAVVLTGRKLLQEASIIAFRDSAIGEQSSSRIGTWLGWIMAAIYMGGRIPQIWKNVRRGTVEGLNPLMFLFALIGNAAYVGSILVKTLEWKELKPNMPWLVDAAVCVILDFFILCQFIYYYKIRKPVVQHEDNNGDYENKGG*

Protein Length: 432

Fln nts: ATGGGGAAGGAAGACATTGTTGGGTTATGCATCGAATGGAATATGCCCACAGGGTGTTCAGTTGCTAGGGCGGGGATTGATAGGATTTCACAGTACTGAGCTGCTGTTATATATAGGGGATTGAGCATTCATAAGGTCCATTA_-_ATGGCAGATTGTGTTTTTGGCGGAAGCTGCGTGTGGTTATTGGAGAAGTATCTCCAGAACTCCCTGGGTAGAGTGAGAGATTATGTTTCTCTGGTTTTTGGATTGATCAGTGTCTTCAGCTGGGCTGTTGCCGAGATTCCACAGATTGTTACCAACTTCAAATCTGGATCTACCGAGGGAGTCTCGCTTGCATTTCTTATGACATGGGTTGTGGGAGATTTATTCAATGTTATTGGGTGTTTGCTGGAGCCAACTACTCTCCCAACACAGTTATATACGGCACTGGTTTATACGATTACCACTGTGGTGCTTGTTTGGCAAACCGCGTATTATGACTACATCCGCAAGTGGTGGAAGTCAAGGAAAGCGAAACCATCACCCGAGAAAGAGGAGTGTGGAAGCGAGGGTCGGTTCGAGAATATTGAACCTGTGAAGATAGCGGAGAGCATGGACTATTCTGCAAAGCAAGGCAGGGGAAATGGTGTAGATCTCCCCAATAGATTATCAAATGGGACCCCTGCTTCTAGTTTACCTATTCCTACTATTTCGCCAGCTCGTGATACATCCATTGGAAAGAGCCTTTATTACACGTCTGCAAGATCTCTAGCAAGCAGTCATACCCCGACTCCAGGCTCATACCTCGTTGCATCATCCCGTGGGTCTGGTCGCAGTGGTCCGAGTTTTATATTAAACCAGTCCTCTGTAGACGATGAAGGATTGCTAGCAAATATTGAATCTACAAGTCCTAAGAAATCAAAAACCATGCTACGCAGTGTAGTTGCGACATCTTTCTTCATTGTCTGGCTCAATTTCTTCCATTTACAAGCCATTCCAACCTTCGATTCTGCTCAAATAGATACAAGCGCAGCAGTTGTACTAACAGGGAGAAAACTTTTGCAGGAAGCGAGCATAATTGCATTCAGAGACTCAGCGATAGGTGAACAGTCCTCCAGTCGAATAGGAACCTGGCTGGGATGGATCATGGCTGCTATTTATATGGGAGGACGGATTCCACAAATCTGGAAAAATGTGCGGCGCGGAACTGTTGAGGGTCTAAATCCATTGATGTTCCTGTTTGCGCTAATAGGAAATGCAGCATATGTAGGCAGCATTCTGGTAAAGACATTGGAATGGAAAGAATTAAAGCCAAATATGCCATGGCTGGTGGATGCTGCAGTCTGTGTGATTTTGGACTTCTTTATTCTTTGCCAGTTCATCTATTATTATAAGATCAGAAAACCTGTTGTTCAGCATGAAGATAACAATGGAGATTACGAAAATAAAGGCGGTTGA___GCATGAAGATAACAACGGAGATTAAGAGAATCAACCCTCTTAGACCTGCAGTATCTGGAATAATAAATTACGTTTCCTTTGGACACCTACTACATTCTACTTTCAGTCCAACTCAATTAAATGGTGCATCAGAACAAGGTCAACTGAAGTGAGCCAGTTGATCATTATGGAGATTATGGTGCAAGCATCATCACTGATGGCTAATTGTGTACCAGAATGTAACCGAAGCGCATGCTTAATGTAACCAATTGCATATTCAAGTTCACTTATCATATTTGTACTTGCTTATTATGTATGCCTCAG

Fln Alignment:

AllPineV4_c5374___CVWLLEKYLQNSLGRVRDYVSLVFGLISVFSWAVAEIPQIVTNFKSGSTEGVSLAFLMTWVVGDLFNVIGCLLEPTTLPTQLYTALVYTITTVVLVWQTAYYDYIRKWWKSRKAKPSPEKEECGSEGRFENIEPVKIAESMDYSAKQGRGNGVDLPNRLSNGTPASSLPIPTISPARDTSIGKSLYYTSARSLASSHTPTPGSYLVAXXXXXXXXXXSFILNQSSVDDEGLLANIESTSPKKSKTMLRSVVATSFFIVWLNFFHLQAIPTFDSAQIDTSAAVVLTGRKLLQEASIIAFRDSAIGEQSSSRIGTWLGWIMAAIYMGGRIPQIWKNVRRGTVEGLNPLMFLFALIGNAAYVGSILVKTLEWKELKPNMPWLVDAAVCVILDFFILCQFIYYYKIRKPVVQHEDNNGDY
B9T4V4_______________CVRWVERYFKDCLCSLKDELSFGFGFVSLVSWGVAEVPQIITNFRTKSSHGVSLLFLLTWVAGDVFNLVGCLLEPATLPTQFYTALLYTTSTIVLVLQGLYYDYIYRWWKGQKNEVNQQVED----------------EKKPLKPKLG-DSGIPIPNASTRSTPR-----------------REYYYTSARSMASSGTPPFRGYL--RTAKSGPSAMGFDHESSSSDDEA--APVSAASVSQPRPIPRSAGYGTFLATSLN------LPLQSKAL--TDAYIGVTSRRLLHEGS----------GMEHSAFGQWLGWLMAAIYMGGRIPQIWLNIKRGSVEGLNPLMFIFALVANLTYVLSIVVRTTEWESIKANMPWLLDAAVCVALDFFIILQYVYYRYFREKKMRHGEDYGDY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1193			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain