SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28544

Length: 887 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28544

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucan synthase like 3 n=2 Tax=Selaginella moellendorffii RepID=D8QQF0_SELML	-	-	75%
FL-Next	sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	glucan synthase like 3	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3		IPR015706	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXT9

Fln msg: Distance to subject end: 593 aas, your sequence is shorter than subject: 295 - 1964

Fln protein: MDVPVNLEARRRIAFFTNSLFMEMPCAPKVRNMLSFSVLTPYYKEDVLFSLKELQLENEDGVSILFYLQKIYPDEWKNFLERVGCETEGDVLELKEKVEELRLWASYRGQTLSRTVRGMMYYRKALELQSFLDMAKDEEIFEGYKVQENIQDEHKTSQRSLWAQLQAVADLKFTYVVSCQMYGIHKRSGDDRAKNILDLMLSYPSLRVAYIDEVEEREKDKSQKVYYSVLVKAVDQLDQEIYRIKLPGSAILGEGKPENQNHAIIFTRGEGLQTIDMNQDNYLEEAFKMRNLLQE

Protein Length: 296

Fln nts: CTATGGATGTGCCTGTGAACCTGGAAGCAAGGCGTCGCATTGCATTTTTTACAAATTCCTTATTTATGGAAATGCCCTGTGCCCCCAAAGTTCGTAATATGCTGTCATTCAGTGTTCTGACGCCATACTACAAGGAGGATGTTCTTTTTTCATTGAAAGAACTTCAGCTGGAAAATGAAGATGGTGTCTCTATTCTTTTCTATTTGCAAAAGATTTACCCAGATGAATGGAAGAATTTCCTAGAACGAGTGGGTTGTGAAACAGAGGGTGACGTCTTAGAACTAAAAGAAAAAGTGGAAGAGCTTCGGCTTTGGGCATCTTATAGAGGGCAGACTCTGAGTAGGACAGTCAGAGGCATGATGTACTACCGGAAAGCCTTAGAACTCCAATCATTTTTGGATATGGCAAAAGATGAAGAGATTTTTGAAGGCTACAAGGTACAAGAGAATATTCAGGATGAGCATAAAACTAGCCAGAGGTCATTATGGGCACAATTGCAGGCAGTGGCAGACCTTAAATTCACATATGTTGTATCATGCCAAATGTATGGTATACATAAGAGATCCGGTGATGATCGTGCAAAGAACATTTTGGATCTTATGTTATCATACCCATCTTTACGGGTTGCTTACATTGATGAAGTAGAAGAGAGAGAGAAAGATAAGTCCCAAAAGGTTTATTACTCGGTCCTTGTGAAGGCTGTGGATCAGCTGGATCAGGAAATATATCGCATCAAACTTCCTGGAAGTGCTATCCTTGGTGAAGGCAAACCCGAAAATCAAAACCATGCTATTATTTTCACTCGCGGTGAAGGTCTGCAAACAATTGATATGAATCAGGACAACTATCTTGAAGAAGCATTTAAAATGAGAAATCTGTTGCAGGAA

Fln Alignment:

AllPineV4_c4938___MDVPVNLEARRRIAFFTNSLFMEMPCAPKVRNMLSFSVLTPYYKEDVLFSLKELQLENEDGVSILFYLQKIYPDEWKNFLERVGCETEGDXXXXXXXXXXXXXWASYRGQTLSRTVRGMMYYRKALELQSFLDMAKDEEIFEGYKVQENIQDEHKTSQRSLWAQLQAVADLKFTYVVSCQMYGIHKRSGDDRAKNILDLMLSYPSLRVAYIDEVEEREKDKS----QKVYYSVLVKA---------VDQLDQEIYRIKLPGSAILGEGKPENQNHAIIFTRGEGLQTIDMNQDNYLEEAFKMRNLLQE
Q9LXT9_______________MDVPSNLEARRRISFFSNSLFMDMPMAPKVRNMLSFSVLTPYYTEEVLFSLRDLETPNEDGVSILFYLQKIFPDEWNNFLERVKCLSEEELKESDELEEELRLWASYRGQTLTRTVRGMMYYRKALELQAFLDMAMHEDLMEGYKAVELNSENNSRGERSLWAQCQAVADMKFTYVVSCQQYGIHKRSGDPRAQDILRLMTRYPSLRVAYIDEVEEPVKDKSKKGNQKVYYSVLVKVPKSTDHSTLAQNLDQVIYRIRLPGPAILGEGKPENQNHAIIFSRGEGLQTIDMNQDNYMEEALKMRNLLQE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
564			25	75	0.996473
582			25	75	0.996486
594		85		14	0.993533
595	85		14		0.993533
625		42		57	1.0
864			75	25	0.996473
865	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain