SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28473

Length: 932 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28473 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group] dbj\|BAD38427.1\| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	6-4 photolyase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	(6-4)DNA photolyase.	EC:4.1.99.13	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV	GO:0009411	Biological Process	0.0	83%
Blast2go	DNA (6-4) photolyase activity	GO:0003914	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	-
Sma3	DNA photolyase, N-terminal	IPR006050	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKF0

Fln msg: your sequence is shorter than subject: 254 - 431

Fln protein: PVSLEGQLLWREFFYTVAYGTPKFDQMEGNPICKQIPWNDNDSLLSAWRDGQTGYPWIDAAMVQLRKWGWMHHLARHAVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSAFFSQYHRIYSPISFGKKYDPDGKYIRYFLPVLKDMPKEYIYEPWTAPIDVQRKVKCIIGKDYPEPLVSHLDASKNCKEKIAAAYALNKGVKAEISQVQLQRVKKNSSYRRNIDDVIKQTPKKLRQKKLTSY*

Protein Length: 255

Fln nts: CTCCAGTTTCACTGGAAGGGCAGTTGTTATGGAGAGAGTTTTTCTACACAGTGGCATACGGGACACCCAAGTTTGATCAAATGGAGGGAAATCCAATTTGCAAACAGATTCCATGGAATGATAATGATAGCCTACTTTCTGCTTGGAGAGATGGTCAGACAGGATACCCCTGGATTGATGCAGCCATGGTGCAGCTTCGGAAATGGGGATGGATGCACCATCTTGCTCGTCATGCAGTTGCATGTTTTTTAACTCGTGGTGACTTGTTTGTCCACTGGGAGAAGGGTCGAGATGTCTTTGACAGATTACTGATTGATTCAGATTGGGCAATTAATAATAGCAACTGGATGTGGCTGTCCTGTTCAGCATTTTTTTCCCAGTACCATCGCATATATTCTCCGATTTCGTTTGGAAAAAAGTATGATCCTGATGGTAAATACATACGGTATTTTCTTCCTGTGTTGAAAGATATGCCAAAAGAATATATATATGAGCCCTGGACTGCACCAATTGATGTTCAAAGGAAGGTGAAATGTATCATTGGCAAAGACTATCCTGAACCTCTGGTATCTCATCTGGACGCAAGCAAGAACTGTAAGGAAAAGATTGCAGCAGCGTATGCACTGAACAAAGGAGTTAAGGCTGAGATTAGTCAAGTGCAATTACAACGTGTAAAGAAAAATTCCAGCTATAGGAGAAACATCGATGATGTAATTAAACAAACCCCAAAGAAGCTACGACAAAAGAAATTGACATCTTATTGA___GTATCCAGTAATAAGTGAACACTAACGAGGATGCCTTGAGAATAATTTTACTTCTAATCAATATAGAGTATATGCGCAACAATCGGTTGTGTTTTGAAGGAAGCAATCGTATTTTTTAATATAATATGTTCTGCTTCCTTTATATCCATTGGTAAGGAAGTAGTCGTA

Fln Alignment:

AllPineV4_c4201___PVSLEGQLLWREFFYTVAYGTPKFDQMEGNPICKQIPWNDNDSLLSAWRDGQTGYPWIDAAMVQLRKWGWMHHLARHAVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSAFFSQYHRIYSPISFGKKYDPDGKYIRYFLPVLKDMPKEYIYEPWTAPIDVQRKVKCIIGKDYPEPLVSHLDASKNCKEKIAAAYALNKGVKAEISQVQLQRVKKNSSYRRNIDDVIKQTPKKLRQKKLTSY
B8LKF0_______________PVSLEGQLLWREFFYTVAYGTPKFDQMEGNPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGWMHHLARHAVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSAFFSQYHRIYSPISFGKKYDPDGKYVRYFLPVLKDMPKEYIYEPWTAPIDVQRKAKCIIGKDYPEPLVSHLGASKNCKEKIAAAYALNKQIKGERNQVQLQGVKKNSSDSRNTDDVIKQPPKKLRQKKLTSY

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
781			14	85	0.993533
805	11		88		0.991528
806		88		11	0.923564
807	88	11			0.923564
813		25		75	1.0
816	25		75		1.0
817		88		11	0.991528
923	75	25			0.996474
924	25	75			0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain