SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28402

Length: 2014 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene28402
CGGGGGAGATCAGACTCAAAGGGAGCCTGCTTGTGGGTGCTCTTCGACCTTCTTCTTCAATTTGGTTGAGAGTATCAACTACACAAATCAGTGTATGTTGCGTCCCATAACTTTCCTGTGAAAGTCTAATCCCCATTTCCTTCAGTCATCACTCTGTTTTTCGCCATTTTTGGCTCAAACTTTGTGCGAATAATGGCATTTGCTGCTTCACAAATGTCTGTCACAAGATCTCCGTTGCCCTTGAACAAGCACTTGGGAAGAACAGCTGAAGACTGTGGCTTCTACAATCCATTGAATCAGAAAATGCTGGCAAGAGCAAAGGGCATTAAGAGGAAGAGGCTGGCACTTAGAGTTGATGCTGTTCAGGTTCCCGAAATTGGAGTGCTATCATCCTCATCCACTCCAGGCTCTCTTAATGGGTGGACACTTGACAGTTGGAAATCCAAAAATGCCCTTCAGCTGCCCCAATACCCAGATGCTGAAGAACTGGAGTCTGTCGTGGATCTTTTGAAGACCTTTCCTCCTTTGGTATTTGCCGGAGAGACACGGAAACTGGAAGAAAGGCTCGGAGAAGCTGCTCTGGGGAAGGCTTTTCTGCTGCAGGGAGGGGACTGTGCAGAGAGTTTTAAGGAATTCAATGCTAATAACATACGAGATACCTTGCGTGTGCTCCTGCAGATGGGTGTTGTGCTCATGTTTGGAGGGCAAATGCCTGTAATCAAAGTGGGGCGAATGGCTGGGCAGTTTGCTAAACCCAGATCAGATGATTTTGAAACTGTGGATGGTGTGAAACTACCAAGTTACAGAGGAGATAATGTTAACGGTGATACTTTCAATCTGAAAGCTCGGTTGCCAGATCCTCAAAGGATGGTTCGTGCTTATTGCCAAGCTGCAGCAACCCTCAACCTTATTCGGGCGTTTGCAACAGGAGGTTATGCAGCAATGCAGCGTGTAATTCAGTGGAATTTGGATTTCACCTCTAACAGCGAGCAAGGGGAGAAGTATATGGAGCTTGCCCATCGTGTCGATGAAGCTCTTGGATTCATGTCTGCCTGTGGCCTTACAGTTGACCATCCCGTTATGAATTCCACTGAATTCTGGACATCCCATGAATGCTTGCTACTCCCATATGAGCAAGCAATGACCAGGGAAGATTCAACTTCTGGATTGTGGTATGATTGCTCTGCTCATATGTTGTGGGTTGGTGAACGCACCAGGCAGCTTGATGGTGCACATATTGAGTTCTTGAGAGGTGTCGCTAATCCTCTGGGTCTCAAGGCTAGTGATAAAATGGACCCAGCAGAGTTGGTGAAGGTCTGTGAGATATTGAACCCTACAAATAAACCAGGGAGGATGACAATAATAGTCCGAATGGGTGCTGAGAAATTGAGGTTGAAGCTACCCCATCTAATCAGAGCAGTGCGCCAGGCAGGCTTGATTGTTACATGGGTCAGCGACCCTATGCATGGTAACACAATTAAAGCACCTTCTGGGCTGAAGACACGTCCATTTGATGCTATCCGGGATGAACTCAAGGCATTCTTTGATGTCCATGAAGAGGAAGGTAGCCACCCTGGAGGTGTCCATTTAGAGATGACAGGACAAAATGTGACAGAATGTATTGGTGGATCTAGAGTAGTAACTCTAGACGATCTCAAATCTAGGTACCATACACATTGTGATCCTCGACTGAATGCCTCACAGTCACTGGAACTTGCTTTTATTATCGCCGAAAGACTGAGAAGAGGAAGAATGACAAAAGCTGACGTGGGAATCCTAAGCTTACTGAAAGGTTTAGCTAATGTGTAACTGTGGTTTTGATGAAAAATTTAGAAAAAGTGGACAGGCTTTCCCATTCAGGCCAGGCAGATCCTTGCAGCCGGTATAAAATCAATATGTATTTCCCCCCCATGATATTGTGAACTTCAGCATTAAACTCCATGTTGATGACACCTGTCCCACTTATGTATATGAGTTTGGTTAATTGGTATATATATATATTTTGCTCTACCCG

Ace file of the UniGene sp_v2.0_unigene28402 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 01 n=3 Tax=core eudicotyledons RepID=B9VU85_VITVI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	2-dehydro-3-deoxyphosphoheptonate aldolase 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	-	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	DAHP synthetase, class II	IPR002480	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMP9

Fln msg:

Fln protein: MAFAASQMSVTRSPLPLNKHLGRTAEDCGFYNPLNQKMLARAKGIKRKRLALRVDAVQVPEIGVLSSSSTPGSLNGWTLDSWKSKNALQLPQYPDAEELESVVDLLKTFPPLVFAGETRKLEERLGEAALGKAFLLQGGDCAESFKEFNANNIRDTLRVLLQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDDFETVDGVKLPSYRGDNVNGDTFNLKARLPDPQRMVRAYCQAAATLNLIRAFATGGYAAMQRVIQWNLDFTSNSEQGEKYMELAHRVDEALGFMSACGLTVDHPVMNSTEFWTSHECLLLPYEQAMTREDSTSGLWYDCSAHMLWVGERTRQLDGAHIEFLRGVANPLGLKASDKMDPAELVKVCEILNPTNKPGRMTIIVRMGAEKLRLKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPSGLKTRPFDAIRDELKAFFDVHEEEGSHPGGVHLEMTGQNVTECIGGSRVVTLDDLKSRYHTHCDPRLNASQSLELAFIIAERLRRGRMTKADVGILSLLKGLANV*

Protein Length: 540

Fln nts: CGGGGGAGATCAGACTCAAAGGGAGCCTGCTTGTGGGTGCTCTTCGACCTTCTTCTTCAATTTGGTTGAGAGTATCAACTACACAAATCAGTGTATGTTGCGTCCCATAACTTTCCTGTGAAAGTCTAATCCCCATTTCCTTCAGTCATCACTCTGTTTTTCGCCATTTTTGGCTCAAACTTTGTGCGAATA_-_ATGGCATTTGCTGCTTCACAAATGTCTGTCACAAGATCTCCGTTGCCCTTGAACAAGCACTTGGGAAGAACAGCTGAAGACTGTGGCTTCTACAATCCATTGAATCAGAAAATGCTGGCAAGAGCAAAGGGCATTAAGAGGAAGAGGCTGGCACTTAGAGTTGATGCTGTTCAGGTTCCCGAAATTGGAGTGCTATCATCCTCATCCACTCCAGGCTCTCTTAATGGGTGGACACTTGACAGTTGGAAATCCAAAAATGCCCTTCAGCTGCCCCAATACCCAGATGCTGAAGAACTGGAGTCTGTCGTGGATCTTTTGAAGACCTTTCCTCCTTTGGTATTTGCCGGAGAGACACGGAAACTGGAAGAAAGGCTCGGAGAAGCTGCTCTGGGGAAGGCTTTTCTGCTGCAGGGAGGGGACTGTGCAGAGAGTTTTAAGGAATTCAATGCTAATAACATACGAGATACCTTGCGTGTGCTCCTGCAGATGGGTGTTGTGCTCATGTTTGGAGGGCAAATGCCTGTAATCAAAGTGGGGCGAATGGCTGGGCAGTTTGCTAAACCCAGATCAGATGATTTTGAAACTGTGGATGGTGTGAAACTACCAAGTTACAGAGGAGATAATGTTAACGGTGATACTTTCAATCTGAAAGCTCGGTTGCCAGATCCTCAAAGGATGGTTCGTGCTTATTGCCAAGCTGCAGCAACCCTCAACCTTATTCGGGCGTTTGCAACAGGAGGTTATGCAGCAATGCAGCGTGTAATTCAGTGGAATTTGGATTTCACCTCTAACAGCGAGCAAGGGGAGAAGTATATGGAGCTTGCCCATCGTGTCGATGAAGCTCTTGGATTCATGTCTGCCTGTGGCCTTACAGTTGACCATCCCGTTATGAATTCCACTGAATTCTGGACATCCCATGAATGCTTGCTACTCCCATATGAGCAAGCAATGACCAGGGAAGATTCAACTTCTGGATTGTGGTATGATTGCTCTGCTCATATGTTGTGGGTTGGTGAACGCACCAGGCAGCTTGATGGTGCACATATTGAGTTCTTGAGAGGTGTCGCTAATCCTCTGGGTCTCAAGGCTAGTGATAAAATGGACCCAGCAGAGTTGGTGAAGGTCTGTGAGATATTGAACCCTACAAATAAACCAGGGAGGATGACAATAATAGTCCGAATGGGTGCTGAGAAATTGAGGTTGAAGCTACCCCATCTAATCAGAGCAGTGCGCCAGGCAGGCTTGATTGTTACATGGGTCAGCGACCCTATGCATGGTAACACAATTAAAGCACCTTCTGGGCTGAAGACACGTCCATTTGATGCTATCCGGGATGAACTCAAGGCATTCTTTGATGTCCATGAAGAGGAAGGTAGCCACCCTGGAGGTGTCCATTTAGAGATGACAGGACAAAATGTGACAGAATGTATTGGTGGATCTAGAGTAGTAACTCTAGACGATCTCAAATCTAGGTACCATACACATTGTGATCCTCGACTGAATGCCTCACAGTCACTGGAACTTGCTTTTATTATCGCCGAAAGACTGAGAAGAGGAAGAATGACAAAAGCTGACGTGGGAATCCTAAGCTTACTGAAAGGTTTAGCTAATGTGTAA___CTGTGGTTTTGATGAAAAATTTAGAAAAAGTGGACAGGCTTTCCCATTCAGGCCAGGCAGATCCTTGCAGCCGGTATAAAATCAATATGTATTTCCCCCCCATGATATTGTGAACTTCAGCATTAAACTCCATGTTGATGACACCTGTCCCACTTATGTATATGAGTTTGGTTAATTGGTATATATATATATTTTGCTCTACCCG

Fln Alignment:

AllPineV4_c3302___MAFAASQMSVTRSPLPLNKHLGRTAEDCGFYNPLNQKMLARAKGIKRKRLALRVDAVQVPEIGVLSSSSTPGSLNGWTLDSWKSKNALQLPQYPDAEELESVVDLLKTFPPLVFAGETRKLEERLGEAALGKAFLLQGGDCAESFKEFNANNIRDTLRVLLQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDDFETVDGVKLPSYRGDNVNGDTFNLKARLPDPQRMVRAYCQAAATLNLIRAFATGGYAAMQRVIQWNLDFTSNSEQGEKYMELAHRVDEALGFMSACGLTVDHPVMNSTEFWTSHECLLLPYEQAMTREDSTSGLWYDCSAHMLWVGERTRQLDGAHIEFLRGVANPLGLKASDKMDPAELVKVCEILNPTNKPGRMTIIVRMGAEKLRLKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPSGLKTRPFDAIRDELKAFFDVHEEEGSHPGGVHLEMTGQNVTECIGGSRVVTLDDLKSRYHTHCDPRLNASQSLELAFIIAERLRRGRMTKADVGILSLLKGLANV
B8LMP9_______________MAFAASRMSVTRCALPLNKPLGRTAEDCGFYNPLNQKMLAREKCIKRKKMPLIVEAVQVPEIGVPSSSSSPGSLNGWKLDSWKSKNALQLPQYPDAEELDSVVDLLKTFPPLVFAGETRKLEERLGEAALGKAFLLQGGDCAESFKEFNANNIRDTLRVLLQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDDFEILDGVKLPSYRGDNINGDTFNLKSRQPDPQRMVRAYCQAAATLNLIRAFTTGGYAAMQRVIQWNLDFTSNSEQGDKYMELAHRVDEALGFMSACGLTVDHPVMNSTEFWTSHECLLLPYEQAMTREDSTSGLWYDCSAHMLWVGERTRQLDGAHLEFLRGVANPLGLKASDKMDPAELVRVCEILNPTNKPGRMTIIVRMGAEKLRLKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPSGLKTRPFDSIRDELKAFFDVHEEEGSHPGGVHLEMTGQNVTECIGGSRVVTLEDLKSRYHTHCDPRLNASQSLELAFIIAERLRRGRMTKADAGILSLLKGLANV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1629			88	11	0.991528
1647	62		37		1.0
1711		90		10	0.90298
1751			80	20	1.0
1851	90			10	0.90298
1852	90			10	0.90298
1935	80	20			0.995493
1985			75	25	0.996473
2012		66		33	0.997476
2014	33	33		33	0.997737
2015	33	33		33	0.997751

SSRs (tot: 1)

Start position	End position	Sequence	Length
14	26	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain