SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28346

Length: 1188 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28346

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA pseudourine synthase 6 [Arabidopsis thaliana] sp\|Q9SVS0.1\|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb\|CAB36821.1\| hypothe	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	ribosomal pseudouridine	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pseudouridine synthase, RsuA and RluB/C/D/E/F	IPR006145	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
769	66		33		0.997452
773			66	33	0.997452
802	25	75			0.996473
806		75		25	0.996473
862	20		80		0.995493
1042	42		57		1.0
1073		60	40		1.0
1121			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain