SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28289

Length: 2386 nt

Origin of reads: Inia v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene28289
CGTCGTGACCTTGGCTGTCACTCAGGGTGGCGGGCAGATGTCAGGAGGGCAAAGGCAGAGAATAGCCATAGCTAGAGCGATGCTGAAAAACCCTTCCATTCTACTTTTAGACGAGGCCACCAGTGCTTTAGATGCGGAATCAGAGAAGATTGTTCAGGACGCACTTGGTAAGGCTTCTATTGGGCGCACTACGGTGGTTGTGGCTCATCGTCTCTCCACTATTCAGGGAGCGCATAAAATTGCGGTGATGCAAAAGGGTCAGGTCATCGAATTCGGTGGACACCAAGAACTGATAAGTAACCCAAATGGGGCATATACAGCTTTACTGCAGATGCAGCAAAAGGCCCCGTCACATGGTACTAACGCTGCATCAAATACTCTAATGCCATCCGGAGTAAATAGCCAAAGCTTAGATGATAACAAGTCACCCGCTAGATCAAATCAATTTGATAGTTGCATATCCGGCCTGGAACAAGAAGAGCTAGAAGCCAATGCTGCGCCCAAATCTTCCTTCTGGAGGTTGCTTGCATTGAATGTTCCAGAGTGGAAGAATACTCTCATGGGCTGTGTAGGCGCCTTTGGATATGCAGCAACTCAAATAGCTTATTCCGTCACTGTGGCAACCATGATTTCTGCGCTCTTTCTGAAAGACGGAAACGAGATCAGATCAAAAGTCGGAACTTATTGCATTCTTTTTATAGCCCTAGCAGTGCATGTATTTGCAGTGAATTTGGTTCAACACTATAACTTCGCAGTGGTGGGTGAGTTTCTAGCAAAAAGGATCCGCCAGAGAATGTTTTCAAAAATTCTTACATTCGAAGTTGGCTGGTTCGATCAGGACCAAAATTCCAGTGGAGCTGTTTGTTCAAAATTGGCCAAGGAAGCTAATGTGGTAAGATCCTTGGTGGGAGATCGTGTTTCACTCCTAGTGGAGTGTGTCTCTGGAGTAACTATAACGGTGACTCTAGGAATGTTGGTAGCTTGGAGACTTGCTATTGTCTTGATCGCTGTGCAGCCGTTGATGGTGCTTTGTTTCTACACCAGAAACGTCCTCCTTAAAAGTGTTTCGGGCAAGTCTATTAAAGCGCAGAATCAAGGTAGCCAAGCGGCCTTCGAATGTGTCACACATCATAGAACCATAGCGGCTTTTTGCTCTCAAGACAAAATTATTAATATTTTTGACTCCACACAGACAGGGCCACGCAGGGAGATCAATAAACAGTCTTGGTACGCAGGATTGGCCCTGGGAACTTCTAAGTTTCTTGAAATATGCTATTGGCCATTTGAGTTTTGGTACGGAGGGAAGCTCATAGCACAAGGTGTTATCAGTTTTCATGCTTTTTTATTGAACCATTTTATATTTGGAAGATTGGGTCGCATGATAGCGGATGCTGGAAGTATGACTTCCGACCTGGCCAAAGGGTCTGATGCTGTCACGTCCGTGTTTGAAATTTTGGACAGAAATAGCCTTATAAATCCAGAGAACCATGGTGCGGTTAACCCTGAGAAAGTCCAAGGCTATGTAGCTCTCAATAGTGTGGACTTTGCTTATCCAGCTCGTCCAAATGCTATGATCTTGAGAAACTTCAGCCTCAAAATCAACGCAGGGAGCAGCGTGGCACTAGTTGGAAAGAGTGGGTGTGGTAAGTCCACTATCATCGGATTGATAGAGAGATTCTATGATCCGCTGAAAGGGACAGTACTCGTTGATGGCAAAGATATAAGGAGCTTCAATTTACGGTCACTGAGAGAGCATATAGCTCTTGTAGGGCAGGAGCCAACTCTTTTTGCTGGGAGCATCCGGGAGAACATTGCCTATGGTAAAGAGAACGCAAGTGAGGCGGAAATAATAGATGCTGCCAAGGCTGCCAATGCCCATGAATTCATTTCGTGCTTGAAGGATGGATACGAAACGAGCACAGGGAACCGGGGAACGCAGCTGTCTGGGGGCCAGAAGCAAAGGATAGCGATAGCAAGGGCAATTATTAAGAATCCAAGCATCTTGTTGTTGGACGAGGCAACCAGTGCACTGGATGCTTATTCGGAGAAGGTAGTTCAGGAGGCATTGGATCGAGTGACGGTGGGACGAACGACTGTCACGGTAGCTCATCGACTGGCGTCAGTCCAGAATGTGGACTGTATAGCAGTTATTGAGAAGGGGAGCGTTGTTGAGCAGGGAAATCACTTGCATCTCATGGAGAAAGGCGAAGGCGGTGCATATTTTGGTCTTATCAAGCTGCAGCAACGTCAGTAGTCAATTATATTTGTATTCAAATTGAATGGGGACCAAAGTTGTACAACTGTCACATTGACAACTACAGTGGTCACTGTACCAAATTCCGATTATTGTTATTTATTAGAGGATAATTCATCGGTTTGTTTTTCT

Ace file of the UniGene sp_v2.0_unigene28289

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Putative multidrug resistance protein; AltName: Full=P-glycoprotein dbj\|BAD16475.1\| putative multidrug resistance p-glycoprotein [Oryza sativa Japonica Group]	-	-	54%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	39%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: your sequence is shorter than subject: 751 - 1316

Fln protein: VVTLAVTQGGGQMSGGQRQRIAIARAMLKNPSILLLDEATSALDAESEKIVQDALGKASIGRTTVVVAHRLSTIQGAHKIAVMQKGQVIEFGGHQELISNPNGAYTALLQMQQKAPSHGTNAASNTLMPSGVNSQSLDDNKSPARSNQFDSCISGLEQEELEANAAPKSSFWRLLALNVPEWKNTLMGCVGAFGYAATQIAYSVTVATMISALFLKDGNEIRSKVGTYCILFIALAVHVFAVNLVQHYNFAVVGEFLAKRIRQRMFSKILTFEVGWFDQDQNSSGAVCSKLAKEANVVRSLVGDRVSLLVECVSGVTITVTLGMLVAWRLAIVLIAVQPLMVLCFYTRNVLLKSVSGKSIKAQNQGSQAAFECVTHHRTIAAFCSQDKIINIFDSTQTGPRREINKQSWYAGLALGTSKFLEICYWPFEFWYGGKLIAQGVISFHAFLLNHFIFGRLGRMIADAGSMTSDLAKGSDAVTSVFEILDRNSLINPENHGAVNPEKVQGYVALNSVDFAYPARPNAMILRNFSLKINAGSSVALVGKSGCGKSTIIGLIERFYDPLKGTVLVDGKDIRSFNLRSLREHIALVGQEPTLFAGSIRENIAYGKENASEAEIIDAAKAANAHEFISCLKDGYETSTGNRGTQLSGGQKQRIAIARAIIKNPSILLLDEATSALDAYSEKVVQEALDRVTVGRTTVTVAHRLASVQNVDCIAVIEKGSVVEQGNHLHLMEKGEGGAYFGLIKLQQRQ*

Protein Length: 752

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTGGCGGGCAGATGTCAGGAGGGCAAAGGCAGAGAATAGCCATAGCTAGAGCGATGCTGAAAAACCCTTCCATTCTACTTTTAGACGAGGCCACCAGTGCTTTAGATGCGGAATCAGAGAAGATTGTTCAGGACGCACTTGGTAAGGCTTCTATTGGGCGCACTACGGTGGTTGTGGCTCATCGTCTCTCCACTATTCAGGGAGCGCATAAAATTGCGGTGATGCAAAAGGGTCAGGTCATCGAATTCGGTGGACACCAAGAACTGATAAGTAACCCAAATGGGGCATATACAGCTTTACTGCAGATGCAGCAAAAGGCCCCGTCACATGGTACTAACGCTGCATCAAATACTCTAATGCCATCCGGAGTAAATAGCCAAAGCTTAGATGATAACAAGTCACCCGCTAGATCAAATCAATTTGATAGTTGCATATCCGGCCTGGAACAAGAAGAGCTAGAAGCCAATGCTGCGCCCAAATCTTCCTTCTGGAGGTTGCTTGCATTGAATGTTCCAGAGTGGAAGAATACTCTCATGGGCTGTGTAGGCGCCTTTGGATATGCAGCAACTCAAATAGCTTATTCCGTCACTGTGGCAACCATGATTTCTGCGCTCTTTCTGAAAGACGGAAACGAGATCAGATCAAAAGTCGGAACTTATTGCATTCTTTTTATAGCCCTAGCAGTGCATGTATTTGCAGTGAATTTGGTTCAACACTATAACTTCGCAGTGGTGGGTGAGTTTCTAGCAAAAAGGATCCGCCAGAGAATGTTTTCAAAAATTCTTACATTCGAAGTTGGCTGGTTCGATCAGGACCAAAATTCCAGTGGAGCTGTTTGTTCAAAATTGGCCAAGGAAGCTAATGTGGTAAGATCCTTGGTGGGAGATCGTGTTTCACTCCTAGTGGAGTGTGTCTCTGGAGTAACTATAACGGTGACTCTAGGAATGTTGGTAGCTTGGAGACTTGCTATTGTCTTGATCGCTGTGCAGCCGTTGATGGTGCTTTGTTTCTACACCAGAAACGTCCTCCTTAAAAGTGTTTCGGGCAAGTCTATTAAAGCGCAGAATCAAGGTAGCCAAGCGGCCTTCGAATGTGTCACACATCATAGAACCATAGCGGCTTTTTGCTCTCAAGACAAAATTATTAATATTTTTGACTCCACACAGACAGGGCCACGCAGGGAGATCAATAAACAGTCTTGGTACGCAGGATTGGCCCTGGGAACTTCTAAGTTTCTTGAAATATGCTATTGGCCATTTGAGTTTTGGTACGGAGGGAAGCTCATAGCACAAGGTGTTATCAGTTTTCATGCTTTTTTATTGAACCATTTTATATTTGGAAGATTGGGTCGCATGATAGCGGATGCTGGAAGTATGACTTCCGACCTGGCCAAAGGGTCTGATGCTGTCACGTCCGTGTTTGAAATTTTGGACAGAAATAGCCTTATAAATCCAGAGAACCATGGTGCGGTTAACCCTGAGAAAGTCCAAGGCTATGTAGCTCTCAATAGTGTGGACTTTGCTTATCCAGCTCGTCCAAATGCTATGATCTTGAGAAACTTCAGCCTCAAAATCAACGCAGGGAGCAGCGTGGCACTAGTTGGAAAGAGTGGGTGTGGTAAGTCCACTATCATCGGATTGATAGAGAGATTCTATGATCCGCTGAAAGGGACAGTACTCGTTGATGGCAAAGATATAAGGAGCTTCAATTTACGGTCACTGAGAGAGCATATAGCTCTTGTAGGGCAGGAGCCAACTCTTTTTGCTGGGAGCATCCGGGAGAACATTGCCTATGGTAAAGAGAACGCAAGTGAGGCGGAAATAATAGATGCTGCCAAGGCTGCCAATGCCCATGAATTCATTTCGTGCTTGAAGGATGGATACGAAACGAGCACAGGGAACCGGGGAACGCAGCTGTCTGGGGGCCAGAAGCAAAGGATAGCGATAGCAAGGGCAATTATTAAGAATCCAAGCATCTTGTTGTTGGACGAGGCAACCAGTGCACTGGATGCTTATTCGGAGAAGGTAGTTCAGGAGGCATTGGATCGAGTGACGGTGGGACGAACGACTGTCACGGTAGCTCATCGACTGGCGTCAGTCCAGAATGTGGACTGTATAGCAGTTATTGAGAAGGGGAGCGTTGTTGAGCAGGGAAATCACTTGCATCTCATGGAGAAAGGCGAAGGCGGTGCATATTTTGGTCTTATCAAGCTGCAGCAACGTCAGTAG___TCAATTATATTTGTATTCAAATTGAATGGGGACCAAAGTTGTACAACTGTCACATTGACAACTACAGTGGTCACTGTACCAAATTCCGATTATTGTTATTTATTAGAGGATAATTCATCGGTTTGTTTTTCT

Fln Alignment:

AllPineV4_c1775___IAIARAMLKNPSILLLDEATSALDAESEKIVQDALGKASIGRTTVVVAHRLSTIQGAHKIAVMQKGQVIEFGGHQELISNPNGAYTALLQMQQ------------------------------------KAPSHGTNAASNT--------LMPSGVNSQS------LDDNKSPARSNQFDSCISGLEQEELE---ANAAPKSSFWRLLALNVPEWKNTLMGCVGAFGYAATQIAYSVTVATMISALFLKDGNEIRSKVGTYCILFIALAVHVFAVNLVQHYNFAVVGEFLAKRIRQRMFSKILTFEVGWFDQDQNSSGAVCSKLAKEANVVRSLVGDRVSLLVECVSGVTITVTLGMLVAWRLAIVLIAVQPLMVLCFYTRNVLLKSVSGKSIKAQNQGSQAAFECVTHHRTIAAFCSQDKIINIFDSTQTGPRREINKQSWYAGLALGTSKFLEICYWPFEFWYGGKLIAQGVISFHAFLLNHFIFGRLGRMIADAGSMTSDLAKGSDAVTSVFEILDRNSLINPENHGAVNPEKVQGYVALNSVDFAYPARPNAMILRNFSLKINAGSSVALVGKSGCGKSTIIGLIERFYDPLKGTVLVDGKDIRSFNLRSLREHIALVGQEPTLFAGSIRENIAYGKEN-XXXXXXXXXXXXXXXHEFISCLKDGYETSTGNRGTQLSGGQKQXXXXXXXXXKNPSILLLDEATSALDAYSEKVVQEALDXXXXXXXXXXXAHRLASVQNVDCIAVIEKGSVVEQGNHLHLMEKGEGGAYFGLIKLQQ
E6Y0T0_______________IAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQESNRSKEQDSKDPDELEIHQDDSKVLGRVSSQRSSFRRSISSGSSGIGGSRRSYSFSYAFPGTVGLQETGGMEEISQSKGNKRRKGLMSYFRSNTQKDVEGGQSDAEKDVSILRLASLNKPEIPVFILGSIAAAMNGMIFPVFGLLLSSVIK-VFYEPPHELRKDAKFWALMFIVLAVTCFIVAPTQMYCFSIAGGRLVQRIRSLTFSKVVYQEISWFDDNENSSGAISARLSTDAATVRSLVGDALSLVVQNIATIIAGIVISFTANWLLALLILAIVPLLGLQGYMQVKFMTGFTADAKLVYEEASQVANDAVGSIRTVASFCAEDKVISLYNEKCSAPLKSGVKQGIIAGLGLGFSNFVMFTQYALSFWVGARLVEDGKTTFDKVFKVFFALSMAAAGISQSAGLSPDLAKAKSSINSVFKILDRPSKIDANDESGTILDNVKGDIEFQHVSFKYPTRPDVQIFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGAVTDEQIIAAAEAANAHKFISSLPQGYNINVGERGVQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQDALDRVKVNRSTIVIAHRLSTIKDADLIAVVKNGKIAEQGKHDELLKK-RNGAYASLVQLHK

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
773		33		66	0.997452
793	33	66			0.997452
866	25			75	0.996473
867	25		75		0.996474
869			25	75	0.996473
887	25		75		0.996473
965		25	75		0.996473
1013	25	75			0.996473
1028		25	75		0.996473
1049		75		25	0.996473
1119	44	55			1.0
1128		11		88	0.923564
1168		12	87		0.992554
1170		87	12		0.992554
1191		71		28	1.0
1206		33	66		1.0
1536		20		80	0.995493
1542			40	60	1.0
1635	66		33		0.997457
1909	33			66	0.997452
2308	87		12		0.992554
2312		12		87	0.992554
2317		85		14	0.993533
2325	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain