SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28215

Length: 2126 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene28215
ATGGGCATAATACTGGAAATTATATATGGCGTTGTTATTAATTGTTATTTCATAGAACGAAGCCTTTCTATTTACATGGTAATCTTAATGTTTATCTAAATGAAAATAAACCAAAGCAACTGTACCATCTCAGAGCCGGGGTATATATGAATAATGTGTATGATGCGTTTGATAATTAGTTAAATCAAGTATGCATACAGTATACCAGCCGAATTACTGATTCATGTTGTTTTTATTGATCAAGGACGTCAGCGCCCAACCACATGAAGCAGTTTACCCTCTGCTCACTTAGCTTCACTTTCCTGCAGCTCACATCTAGCAACACCTATAGATGAGATAACAGATCTAATGCTCGTGTTGCTGATATAGCAACCAGTAATCCGATAGGCAGATGCAGATCCAGTTCTATCTGGGAGAATTGCTCCATGACCTGTTGTAGATGTTTGCATAGAGAAGACACTCATCCCAGAGTACACTTATATTTATTTGGGAGGAGCTATCAATGTCATGACGAAAGACATCATGGAGAATTTAAATCTTCAAAGGATGTCAAAGCAAACCTCCATTGTTCTTCAAATGGTTGACAAGTCCGCTATTAAGCCGAAAGGGATCCTAGAAGATGTGTTTTGATTATCAAAAGGAATCCTAGATGTGCTTTGATTATCAAAATTCCTATAGAAGTGCCACGCTGAGCTCATGACTACATAAGATGAACGACTCAGAATAACATATGAAATTCTCAATAGTATGAAAATAATCAAATTACAAGCAGGGAAGAAAAAATCAAAGAGCTCATAGAAAATCTGAGTTGTCGAGCTCAAATTGTTGTTTTCTGTACAGGTTAATAGAACACATGGCACCATACTCTACTGGATGTCACCCATCATTACTGCATCTATGGTTTTTGCAGGGTGTGCTATCATAGGTGATCCACTGTTAACTGCCATGTCCATATTTACAGTCTTGCAATATTCCATGTCACGCAAGAGCCAGTGAGAATGCTAGCTGACGTTTTGGCTATATTAATTCAAGTTAAAGTCTTCCTAGATCGTCTGGACAAGTTATTACAAGATGCTGCGCTGAGACAAGATGTTGTTGTGAGGAAAGCACTCGCTGGATCACAGTATATCGTCGAAATTCTTCAAGGTATATTCAGTTGGGACCGGGAGTCTTCACTGCAAAAACTAACATTGAAGGGAATAAATCTGCAAATTAAAGAAGGGAGAAAAGGTAGCAATTTGTGGCTCAGTGGGATCAGTGAAATCTGCTCGGCTATATACAATTGTTGGAGAAATCCCAAAAAATTCAGGGGATGTTCAAGTGTATGGTAGTGTTGCCTGCTTGGCACAAACAGCTTGGATTCAGAGTGGGACTGTCAAAGATAACATATTCTATGGGAAAAAAATGGACAAAATTCAGTACATGACAGGCAATAAAAGATTGTACATTAGACCAGGATATAGAGAGCTTTGCTTCAAGACTCAAATGGTTGTCTTTGGTAACAAAGGTTTAATGGGTCTCGTTCTGTTGTTTGTTTTAAGTTCATAGTCTTGTTTTCTAGTTGTAAACCGTGCAACTGCTCCATATACAGTAAGCCTAACGAGTTATTTCGTGTTAGTTTAAGGAAGCTTGTTACCAGGTGCAGTGTGAATTAAGGTTAATATGCCAGGAGATACATTAGAATTCCATGGTTTGCTTGTTTAATGTAGCCTTCTTTCACTTGTTTGTTTTAAGTTTACAGTCTTGTTTTCTAGTTGTAAGCCCTGCAACTGCTCCATATACTGCAAGCCTAAGGAGTTATTTTTTTAAGTTTAAGGAAGCTTGTTCCCAGGTGCAGTATGCATTAAGGTTAAATATATGGCATGAGATATATTTGATTTCCACAGTTTGCTTGTTTAATGTAGTCTTCGTTCAGATAATGGAATCTATTTTCAACAGAAATAGTTGAAATTTTGATGAAGGTTTAAAGGATCACTCTAGCCGGGGAGAATGCTATTCCAAGATTTGATCAAGATGCATACAATCAGATCGTTAGAAATGCCAATCTCCGACTGCCAGAAGATGGTCACAACACCATAGTGGAAGCCAGGTGTGCATTCACTTATTTGAGAATGAGCGAGCATTTG

Ace file of the UniGene sp_v2.0_unigene28215

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance associated protein 1 n=3 Tax=Andropogoneae RepID=Q6Y3I1_MAIZE	-	-	4.06377e-44	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	abc transporter c family member 8-like	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD77

Fln msg: Distance to subject end: 52 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 53 - 210

Fln protein: RITLAGENAIPRFDQDAYNQIVRNANLRLPEDGHNTIVEARCAFTYLRMSEHL

Protein Length: 54

Fln nts: ATGGGCATAATACTGGAAATTATATATGGCGTTGTTATTAATTGTTATTTCATAGAACGAAGCCTTTCTATTTACATGGTAATCTTAATGTTTATCTAAATGAAAATAAACCAAAGCAACTGTACCATCTCAGAGCCGGGGTATATATGAATAATGTGTATGATGCGTTTGATAATTAGTTAAATCAAGTATGCATACAGTATACCAGCCGAATTACTGATTCATGTTGTTTTTATTGATCAAGGACGTCAGCGCCCAACCACATGAAGCAGTTTACCCTCTGCTCACTTAGCTTCACTTTCCTGCAGCTCACATCTAGCAACACCTATAGATGAGATAACAGATCTAATGCTCGTGTTGCTGATATAGCAACCAGTAATCCGATAGGCAGATGCAGATCCAGTTCTATCTGGGAGAATTGCTCCATGACCTGTTGTAGATGTTTGCATAGAGAAGACACTCATCCCAGAGTACACTTATATTTATTTGGGAGGAGCTATCAATGTCATGACGAAAGACATCATGGAGAATTTAAATCTTCAAAGGATGTCAAAGCAAACCTCCATTGTTCTTCAAATGGTTGACAAGTCCGCTATTAAGCCGAAAGGGATCCTAGAAGATGTGTTTTGATTATCAAAAGGAATCCTAGATGTGCTTTGATTATCAAAATTCCTATAGAAGTGCCACGCTGAGCTCATGACTACATAAGATGAACGACTCAGAATAACATATGAAATTCTCAATAGTATGAAAATAATCAAATTACAAGCAGGGAAGAAAAAATCAAAGAGCTCATAGAAAATCTGAGTTGTCGAGCTCAAATTGTTGTTTTCTGTACAGGTTAATAGAACACATGGCACCATACTCTACTGGATGTCACCCATCATTACTGCATCTATGGTTTTTGCAGGGTGTGCTATCATAGGTGATCCACTGTTAACTGCCATGTCCATATTTACAGTCTTGCAATATTCCATGTCACGCAAGAGCCAGTGAGAATGCTAGCTGACGTTTTGGCTATATTAATTCAAGTTAAAGTCTTCCTAGATCGTCTGGACAAGTTATTACAAGATGCTGCGCTGAGACAAGATGTTGTTGTGAGGAAAGCACTCGCTGGATCACAGTATATCGTCGAAATTCTTCAAGGTATATTCAGTTGGGACCGGGAGTCTTCACTGCAAAAACTAACATTGAAGGGAATAAATCTGCAAATTAAAGAAGGGAGAAAAGGTAGCAATTTGTGGCTCAGTGGGATCAGTGAAATCTGCTCGGCTATATACAATTGTTGGAGAAATCCCAAAAAATTCAGGGGATGTTCAAGTGTATGGTAGTGTTGCCTGCTTGGCACAAACAGCTTGGATTCAGAGTGGGACTGTCAAAGATAACATATTCTATGGGAAAAAAATGGACAAAATTCAGTACATGACAGGCAATAAAAGATTGTACATTAGACCAGGATATAGAGAGCTTTGCTTCAAGACTCAAATGGTTGTCTTTGGTAACAAAGGTTTAATGGGTCTCGTTCTGTTGTTTGTTTTAAGTTCATAGTCTTGTTTTCTAGTTGTAAACCGTGCAACTGCTCCATATACAGTAAGCCTAACGAGTTATTTCGTGTTAGTTTAAGGAAGCTTGTTACCAGGTGCAGTGTGAATTAAGGTTAATATGCCAGGAGATACATTAGAATTCCATGGTTTGCTTGTTTAATGTAGCCTTCTTTCACTTGTTTGTTTTAAGTTTACAGTCTTGTTTTCTAGTTGTAAGCCCTGCAACTGCTCCATATACTGCAAGCCTAAGGAGTTATTTTTTTAAGTTTAAGGAAGCTTGTTCCCAGGTGCAGTATGCATTAAGGTTAAATATATGGCATGAGATATATTTGATTTCCACAGTTTGCTTGTTTAATGTAGTCTTCGTTCAGATAATGGAATCTATTTTCAACAGAAATAGTTGAAATTTTGATGAAGGTTTAAAGGATCACTCTAGCCGGGGAGAATGCTATTCCAAGATTTGATCAAGATGCATACAATCAGATCGTTAGAAATGCCAATCTCCGACTGCCAGAAGATGGTCACAACACCATAGTGGAAGCCAGGTGTGCATTCACTTATTTGAGAATGAGCGAGCATTTG

Fln Alignment:

AllPineV4_c93___ITLAGENAIPRFDQDAYNQIVRNANLRLPEDGHNTIVEARCAFTYLRMSEHL
D5AD77_______________VPLAGENALPRFDQDAHNQIIRNANLRLPEDSGNTTVEPMCAFTYLRMSQHL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1406		42		57	1.0
1438	42	42			1.0
1460	37			62	1.0
1586		83	16		0.994512
1587	83		16		0.994512
1608		60		40	1.0
1669	50		50		1.0
1753	33	66			0.997452
1797	25			75	0.996473
1808		33	66		0.997452
1835		66		33	0.997452
1842	33	66			0.997458
1847	25		75		0.996473
1850		75	25		0.996473
1851	75		25		0.996473
1872		25		75	0.996473
1881	60	40			1.0
1899		60		40	1.0
1918			16	83	0.994512
1919	83		16		0.994512
1945	40			60	1.0
1968			50	50	1.0
1980		25		75	0.99649
2015		66		33	0.997452
2047		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain