SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28141

Length: 1308 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28141 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[B] COG5602 Histone deacetylase complex, SIN3 component	-	-	9.0e-08	29%
FL-Next	sp=Paired amphipathic helix protein Sin3-like 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	paired amphipathic helix protein sin3-like 4-like	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Histone deacetylase interacting	IPR013194	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04539

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 186 aas, your sequence is shorter than subject: 435 - 1362

Fln protein: GKFNNGNSNLCQG*NGKW*ECHQGRWCS*N*PKWA*K*WWKIAFHCTCC**DAWYSHAGWSH*KVR*LKCYDCSSNRVKFRTIDFGPCVRDWCTAFKAWATGW*EWA*AFHKG*GGAFSRGK*ETAYWLKNGR*DHGFEIS*RRSCT*QLES*KRRR*VVTYTRD*GSTEHIVCQC*QCSVWYRCCA*RGGEWRKQAV*E*TW*R*RG*VWC*GRRRT*C*CR**RGRESSKID*G**ECV*SW*RCFR*RIWRW**VLA*RSRGGRGR***A*RK*WEAESEGEAEVTADAQDVDGEGTSLALSDRSLLTAKPLAIHVPSTLNNGAPKDSKVFYGNDSFYVLFRLHQTLYERILSAKKNSLSAERKWKSVKDTNPPDLYGKFMNILFSLLDGSADNAKFEDDCRAIIGTQSYVLFTLDKLIFKLVKQLQAIASD

Protein Length: 436

Fln nts: GAGGAAAATTTAATAATGGGAACAGCAATCTCTGCCAGGGGTAGAATGGCAAATGGTGAGAGTGCCATCAAGGGAGATGGTGTTCATGAAACTGACCAAAATGGGCATAAAAGTGATGGTGGAAAATTGCATTCCACTGCACCTGCTGCTGATGAGATGCCTGGTACAGCCATGCAGGTTGGTCGCATTGAAAAGTTAGATGACTCAAATGCTACGATTGTAGTTCCAACAGAGTCAAGTTCAGGACGATTGACTTTGGACCATGTGTCAGGGACTGGTGCACTGCATTCAAGGCCTGGGCAACTGGTTGGTGAGAGTGGGCCTGAGCCTTCCATAAAGGATAGGGTGGGGCCTTTAGTAGAGGAAAATGAGAGACGGCATATTGGCTTAAGAATGGAAGGTAGGATCATGGATTTGAGATATCTTGAAGAAGGAGCTGTACATAGCAGCTTGAAAGTTGAAAGAGAAGAAGGTGAGTTGTCACCTACACCAGAGACTGAGGATCGACAGAACACATTGTATGCCAATGCTAGCAATGTAGTGTCTGGTACAGATGCTGTGCCTAGAGGGGAGGAGAATGGCGCAAACAGGCAGTATAGGAATAGACGTGGTGAAGATGAAGAGGTTGAGTGTGGTGCTGAGGCAGGAGGAGAACATGATGCTGATGCAGATGATGAAGGGGAAGAGAGTCCTCAAAGATCGACTGAGGATAGTGAGAATGCGTCTGAAGCTGGTGAAGATGTTTCAGGTAGCGAATCTGGAGATGGTGATGAGTGCTCGCATGAAGATCACGAGGAGGAAGAGGAAGATGATGATGAGCATGAAGAAAATGATGGGAAGCTGAAAGTGAAGGTGAGGCTGAGGTAACAGCTGATGCGCAGGATGTTGATGGAGAAGGGACATCCTTGGCACTTTCAGATCGTTCTCTGCTTACAGCCAAGCCTCTTGCAATACATGTTCCTTCTACTTTAAACAATGGAGCGCCAAAAGATTCAAAAGTTTTCTATGGCAATGACTCCTTTTATGTGCTTTTCAGGCTCCACCAGACATTATATGAGCGAATACTCTCAGCAAAGAAAAATTCGTTATCTGCTGAACGTAAATGGAAAAGTGTAAAAGATACAAATCCTCCAGATTTGTATGGAAAATTTATGAACATATTATTCAGTTTACTAGATGGATCGGCAGATAATGCTAAGTTTGAGGATGATTGCCGAGCAATTATTGGTACACAGTCCTATGTGTTGTTCACATTGGACAAATTGATATTTAAACTCGTAAAACAGCTTCAAGCCATTGCGTCAGATG

Fln Alignment:

Contig28141___EAESEGEAE--VTADAQDVDGEGTSLALSDRSLLTAKPLAIHVPSTL----NNGAPKDSKVFYGNDSFYVLFRLHQTLYERILSAKKNSLSAERKWKSVKDTNPPDLYGKFMNILFSLLDGSADNAKFEDDCRAIIGTQSYVLFTLDKLIFKLVKQLQAIASD
O04539_______________KVESEGEAEEGMSDGHDDTEGDMPVLSISVKNLLHVKPLAKYVPPALYDKDNDDSRKNSQVFYGNDSFYVLFRLHQILYDRILSAKINSSSPDRKWKTSNPTNPADSYARIMDALYNLLDGTSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLIKHLQAVAAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain