SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27998

Length: 464 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene27998
AGGCATGAGTCAAGAGGGCGCTGGTAGTTCCCTACAACCCACAATAGAATGGAGTTGCAGAGCAGAAGAATCGACCCATCATAGGGGTTACTAAGGCAATGATACATGACCAAGACTTGCTGATGTTTCTTTGGAATGAAGCATGCAACACAACAATCTACATCTAGAGCTGGTGTCTTCAAAGGATCTTGGAGGACAAGACACCAAATGAGGCATTCACTAGTGTGAAACTAGAGGTGAGTGATTTTTGCATCTTTGGTTGTCCAATTTATATCCACATATAGTAGAAAAGAGGACCAAATTGGAGCCCTCTAGCATGAAGTGTCTATTTGTAGGTTACAATAGGACTTCAAAGGCTTATATGGTATATGTTCCAAAGCAGAGGATGACAATAGTGAGATGGGATGTAAAGTTTGAGGAAGACTTTGCAACCAGGGAGTTCCATGAGCCTATTTGGTGACAGA

Ace file of the UniGene sp_v2.0_unigene27998 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	copia-type polyprotein	-	-	1.38642e-23	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Overlapping hits, possible frame ERROR between 281 and 266, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 34 aas, your sequence is shorter than subject: 153 - 407

Fln protein: A*VKRALVVPYNPQ*NGVAEQKNRPIIGVTKAMIHDQDLLMFLWNEACNTTIYI*SWCLQRILEDKTPNEAFTSVKLEVSDFCIFGCxxxxxxxVEKRTKLEPSSMKCLFVGYNRTSKAYMVYVPKQRMTIVRWDVKFEEDFATREFHEPIW*

Protein Length: 154

Fln nts: AGGCATGAGTCAAGAGGGCGCTGGTAGTTCCCTACAACCCACAATAGAATGGAGTTGCAGAGCAGAAGAATCGACCCATCATAGGGGTTACTAAGGCAATGATACATGACCAAGACTTGCTGATGTTTCTTTGGAATGAAGCATGCAACACAACAATCTACATCTAGAGCTGGTGTCTTCAAAGGATCTTGGAGGACAAGACACCAAATGAGGCATTCACTAGTGTGAAACTAGAGGTGAGTGATTTTTGCATCTTTGGTTGTxxxxxxxxxxxxxxxxxxxxxGTAGAAAAGAGGACCAAATTGGAGCCCTCTAGCATGAAGTGTCTATTTGTAGGTTACAATAGGACTTCAAAGGCTTATATGGTATATGTTCCAAAGCAGAGGATGACAATAGTGAGATGGGATGTAAAGTTTGAGGAAGACTTTGCAACCAGGGAGTTCCATGAGCCTATTTGGTGACAGA

Fln Alignment:

Contig27998___VKRALVVPYNPQ*NGVAEQKNRPIIGVTKAMIHDQDLLMFLWNEACNTTIYI*SWCLQRILEDKTPNEAFTSVKLEVSDFCIFGCxxxxxxV-EKRTKLEPSSMKCLFVGYNRTSKAYMVYVPKQRMTIVRWDVKFEE
B8LKX7_______________IKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCxxxxxxPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain