SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27990

Length: 536 nt

UniGene Fasta

>sp_v2.0_unigene27990
AAAATTAGATAAGGGGAGTCACAAGATCCTGTTAGATGCTGCCATTGAAAGGATGAAGATAAACACTTGCCAACTTGTACGCAAACAAAAACAACGAATCAGTCGACTGAAAACATTCTCTGGTTGGAACCTGCATCAACTTGATTCAACAAAAGCTCTAGAAACATCTGGCTCTGAATCGCTTGAACATTGGGAAATGATGGTAGTCAATATTAGTATGGACGTGGTGAAAAGGTTTTTGTCTGAGCGCACATGTGAAACAAGCTTAAAAGAAAATGTGGAATCCAGAGGTGACTCTATGCATCCAGAGCAAGCACAAGATTTATGGATACATTCCTGTGAGGCTTGCAGAGATCAAGTGCTTCAGGGAGCACATGAATGGGAGAAACATAAACTTGGTCGTTCACATCGAAGGCAAATTCTGTGACTTGAAGTAATTCAATGACTCGAAAAATGACTTACAAGATTAAATAGTGAGAATCAAGTAGTGGAGGCACAAATTTGGTTCTAACATCTGAACAAACTTTGATGAGCTT

Ace file of the UniGene sp_v2.0_unigene27990

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative tRNA isopentenylpyrophosphatase n=1 Tax=Ipomoea trifida RepID=Q6JJ27_IPOTF	-	-	2.0e-22	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	trna isopentenyltransferase	-	-	0.0	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA dimethylallyltransferase.	EC:2.5.1.75	-	0.0	64%

Source	KEGGs	Term	Type	Identity
Blast2go	Zeatin biosynthesis	00908		64%
Blast2go	Biosynthesis of plant hormones	01070		64%
Blast2go	Metabolic pathways	01100		64%
Blast2go	Biosynthesis of secondary metabolites	01110		64%
Blast2go	Adenylate dimethylallyltransferase.	EC:2.5.1.27	-	64%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Zeatin biosynthesis	00908		0.0	64%
Blast2go	Biosynthesis of plant hormones	01070		0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	cytokinin biosynthetic process	GO:0009691	Biological Process	64%
Blast2go	AMP dimethylallyltransferase activity	GO:0009824	Molecular Function	64%
Blast2go	cytosol	GO:0005829	Cellular Component	64%
Blast2go	tRNA dimethylallyltransferase activity	GO:0052381	Biological Process	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	tRNA isopentenyltransferase	IPR002627	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNK3

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 146 - 462

Fln protein: KLDKGSHKILLDAAIERMKINTCQLVRKQKQRISRLKTFSGWNLHQLDSTKALETSGSESLEHWEMMVVNISMDVVKRFLSERTCETSLKENVESRGDSMHPEQAQDLWIHSCxxLAEIKCFREHMNGRNINLVVHIEGKFCDLK*

Protein Length: 147

Fln nts: AAAATTAGATAAGGGGAGTCACAAGATCCTGTTAGATGCTGCCATTGAAAGGATGAAGATAAACACTTGCCAACTTGTACGCAAACAAAAACAACGAATCAGTCGACTGAAAACATTCTCTGGTTGGAACCTGCATCAACTTGATTCAACAAAAGCTCTAGAAACATCTGGCTCTGAATCGCTTGAACATTGGGAAATGATGGTAGTCAATATTAGTATGGACGTGGTGAAAAGGTTTTTGTCTGAGCGCACATGTGAAACAAGCTTAAAAGAAAATGTGGAATCCAGAGGTGACTCTATGCATCCAGAGCAAGCACAAGATTTATGGATACATTCCTGTxxxxxxCTTGCAGAGATCAAGTGCTTCAGGGAGCACATGAATGGGAGAAACATAAACTTGGTCGTTCACATCGAAGGCAAATTCTGTGACTTGAAGTAATTCAATGACTCGAAAAATGACTTACAAGATTAAATAGTGAGAATCAAGTAGTGGAGGCACAAATTTGGTTCTAACATCTGAACAAACTTTGATGAGCTT

Fln Alignment:

Contig27990___KLDKGSHKILLDAAIERMKINTCQLVRKQKQRISRLKTFSGWNLHQLDSTKALETSGSESLEHWEMMVVNISMDVVKRFLSERTCETSLKENVESRGDSMHPEQAQDLWIHSCExRLAEIKCFREHMNGRNINLVVHIEGKFCDLK*FNDSKNDLQD
B8LNK3_______________KLDKGRHKILLDAAIERMKTNTCQLVRRQKLRIDRLKTFFGWNLHRLDSTKALETSGSESLEHWEMMVVNISMDTVKRFLSEHACEASLKENVETRVDSTHPEHAQEFWTHACExRLAEIKCFREHMNGSNINLVVHIGGKFCDLTKFSDSKNNLQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain