SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27898

Length: 1962 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene27898
GGTTTGCTATTATGCTCACTGGTTTTTGCCTCTGCCGCCATCATCAAAGCCAGGGCTTTGAAGAAAAGTAATGCTTCAAGATCCTGGAAGCTAACAGCATTCCAGAGGCTGGACTTCACCTGTGAAGATGTCCTGGAGTGTTTGAAAGAGGAAAATATTATTGGGAAGGGAGGAGCAGGGGTTGTGTATAAGGGTTCGATGCGGAGCGGTGAGGAATTTGCAGTGAAGAGGTTGCCTGGGATTGGAAGAGGGTCTTCTCACGACCATGGTTTTGCTGCAGAGATTCAGACTTTGGGCAAGATTCGACATCGCCATATAGTGAGACTGTTGGGGTTTTGCTCAAATCAAGAAATCAATTTGCTTGTTTACGAGTACATGCCAAACGGAAGCCTGGGAGAGTTACTACATGGGAAGAAAGGTGGGCATTTACAATGGGCTACCAGATACAAGATTGCTGTTGAGGCAGCTAAAGGGCTCTGCTATTTGCACCATGATTGCTGCCCGATTATAATACACCGTGATGTAAAGTCCAACAACATTCTCTTGGATTCCAATTTTGAGGCCCATGTAGCCGATTTCGGCCTTGCAAAGTTTTTGCAGGATTCGGGGGCTTCGGAATGTATGTCTTCCATTGCAGGTTCCTATGGTTACATTGCTCCAGAATATGCATACACGCTGAAAGTGGATGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTCTGCTGGAACTAGTCACTGGTAGAAGGCCCGTGGGGGAGTTTGGAGATGGTATAGATATTGTTCAATGGGTAAACAAGATGACTAACTCAACCAAGGAAGGAGTTTCAAACATTTTGGACGAGAGACTGTCGTCAGTTCCTTTGCACGACGTTATCCACGTTTTCTGTGTGGCAATGGCATGTGTCGAAGAACATAGCGTAGAGAGGCCTACCATGAGAGAGGTTGTTCAGATGCTCAGTGACATTCCAAAGATCAAACCTTCTGAAAATCCCCTACCTGCTTCAGAAGGAGCGGAATCCCCCCAACAAGCCGGTGCTGCCCACCCTCCTGATCTCCTCTCTATTTGAATCCATTTTCAAATTTTCATTGTTAGTACACATGGTCAGTGCCAGTTAATATTGTCAAAATTCATAGACAGAATATCAGTTAGCAGTAGCAACCTCAAAATTCCTTTCAGGAGGGTAATTAATTTACTCGTATGCATTCTGTGAGTTCTGTTGTTGGTTGTGGGAGTGAAATTTATTCACTCATTTTCCTCTAGTGAGACACCATTTTCTAGTTACCAGGATATGCTCCATGTTCTATGAGAGAAGGACAGCACTTTTTAATGCAGATCACTTGCACATGACTGTGTTGGTTGATCACTTGAGATATGAATAGAACTAGATCTAGATGCTATAGGAATGTTTTATTTTAAATACATTAAGTTACCTTCATGTGGGCAATTAGCCTTGCTTTTCTTGTCAAACCCCTTCTCCACTCGTAAAATGCAATCAACACTTCCGAAATTTATCAACCTGTCTTCTATAAAGAAGGAAGAAAGATTTCAAGGAAGACATTGATTATGTTAATCCAACTTTCTAGCCCATTTCTCCTGTCTTGTCTTGGCCAGAATTCTGATTGTCATTGACCAGCAATGGCAACGAAGATTTTCCAAACAATCTTTCCAAGCTCAACAGATCAGACTCTTAGGGAAAACATATGGCGACTAGATGGGAAGTGATTTAGAATAAACAAAGCCCGAGGCTGGGGAACCTATGTTCTGTTTTGTAAAGCAAGGGCTTATAGGCCTTCACGGAAGGCATGTCTGTAGATGTGCGGTTTGTTTTATAAATTTACAGTCAAATTCTAATATCTACGGTGACTAGATGGGAAGTGATTTCGATTAAACAAAGCATGAGGCTGGGAAACCTATGTTCTATTTTGTAAAGCAAGGGCTTATAAGAATTCATGGAAGGCAT

Ace file of the UniGene sp_v2.0_unigene27898

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN	-	-	73%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	56%
Blast2go	leucine-rich receptor-like protein kinase bam1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	84%
Blast2go	response to water deprivation	GO:0009414	Biological Process	84%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	84%
Blast2go	starch catabolic process	GO:0005983	Biological Process	84%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	84%
Blast2go	gametophyte development	GO:0048229	Biological Process	84%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	84%
Blast2go	kinase activity	GO:0016301	Molecular Function	84%
Blast2go	protein self-association	GO:0043621	Molecular Function	84%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: your sequence is shorter than subject: 356 - 998

Fln protein: GLLLCSLVFASAAIIKARALKKSNASRSWKLTAFQRLDFTCEDVLECLKEENIIGKGGAGVVYKGSMRSGEEFAVKRLPGIGRGSSHDHGFAAEIQTLGKIRHRHIVRLLGFCSNQEINLLVYEYMPNGSLGELLHGKKGGHLQWATRYKIAVEAAKGLCYLHHDCCPIIIHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRRPVGEFGDGIDIVQWVNKMTNSTKEGVSNILDERLSSVPLHDVIHVFCVAMACVEEHSVERPTMREVVQMLSDIPKIKPSENPLPASEGAESPQQAGAAHPPDLLSI*

Protein Length: 357

Fln nts: GGTTTGCTATTATGCTCACTGGTTTTTGCCTCTGCCGCCATCATCAAAGCCAGGGCTTTGAAGAAAAGTAATGCTTCAAGATCCTGGAAGCTAACAGCATTCCAGAGGCTGGACTTCACCTGTGAAGATGTCCTGGAGTGTTTGAAAGAGGAAAATATTATTGGGAAGGGAGGAGCAGGGGTTGTGTATAAGGGTTCGATGCGGAGCGGTGAGGAATTTGCAGTGAAGAGGTTGCCTGGGATTGGAAGAGGGTCTTCTCACGACCATGGTTTTGCTGCAGAGATTCAGACTTTGGGCAAGATTCGACATCGCCATATAGTGAGACTGTTGGGGTTTTGCTCAAATCAAGAAATCAATTTGCTTGTTTACGAGTACATGCCAAACGGAAGCCTGGGAGAGTTACTACATGGGAAGAAAGGTGGGCATTTACAATGGGCTACCAGATACAAGATTGCTGTTGAGGCAGCTAAAGGGCTCTGCTATTTGCACCATGATTGCTGCCCGATTATAATACACCGTGATGTAAAGTCCAACAACATTCTCTTGGATTCCAATTTTGAGGCCCATGTAGCCGATTTCGGCCTTGCAAAGTTTTTGCAGGATTCGGGGGCTTCGGAATGTATGTCTTCCATTGCAGGTTCCTATGGTTACATTGCTCCAGAATATGCATACACGCTGAAAGTGGATGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTCTGCTGGAACTAGTCACTGGTAGAAGGCCCGTGGGGGAGTTTGGAGATGGTATAGATATTGTTCAATGGGTAAACAAGATGACTAACTCAACCAAGGAAGGAGTTTCAAACATTTTGGACGAGAGACTGTCGTCAGTTCCTTTGCACGACGTTATCCACGTTTTCTGTGTGGCAATGGCATGTGTCGAAGAACATAGCGTAGAGAGGCCTACCATGAGAGAGGTTGTTCAGATGCTCAGTGACATTCCAAAGATCAAACCTTCTGAAAATCCCCTACCTGCTTCAGAAGGAGCGGAATCCCCCCAACAAGCCGGTGCTGCCCACCCTCCTGATCTCCTCTCTATTTGA___ATCCATTTTCAAATTTTCATTGTTAGTACACATGGTCAGTGCCAGTTAATATTGTCAAAATTCATAGACAGAATATCAGTTAGCAGTAGCAACCTCAAAATTCCTTTCAGGAGGGTAATTAATTTACTCGTATGCATTCTGTGAGTTCTGTTGTTGGTTGTGGGAGTGAAATTTATTCACTCATTTTCCTCTAGTGAGACACCATTTTCTAGTTACCAGGATATGCTCCATGTTCTATGAGAGAAGGACAGCACTTTTTAATGCAGATCACTTGCACATGACTGTGTTGGTTGATCACTTGAGATATGAATAGAACTAGATCTAGATGCTATAGGAATGTTTTATTTTAAATACATTAAGTTACCTTCATGTGGGCAATTAGCCTTGCTTTTCTTGTCAAACCCCTTCTCCACTCGTAAAATGCAATCAACACTTCCGAAATTTATCAACCTGTCTTCTATAAAGAAGGAAGAAAGATTTCAAGGAAGACATTGATTATGTTAATCCAACTTTCTAGCCCATTTCTCCTGTCTTGTCTTGGCCAGAATTCTGATTGTCATTGACCAGCAATGGCAACGAAGATTTTCCAAACAATCTTTCCAAGCTCAACAGATCAGACTCTTAGGGAAAACATATGGCGACTAGATGGGAAGTGATTTAGAATAAACAAAGCCCGAGGCTGGGGAACCTATGTTCTGTTTTGTAAAGCAAGGGCTTATAGGCCTTCACGGAAGGCATGTCTGTAGATGTGCGGTTTGTTTTATAAATTTACAGTCAAATTCTAATATCTACGGTGACTAGATGGGAAGTGATTTCGATTAAACAAAGCATGAGGCTGGGAAACCTATGTTCTATTTTGTAAAGCAAGGGCTTATAAGAATTCATGGAAGGCAT

Fln Alignment:

Contig27898___KKSNASRSWKLTAFQRLDFTCEDVLECLKEENIIGKGGAGVVYKGSMRSGEEFAVKRLPGIGR-GSSHDHGFAAEIQTLGKIRHRHIVRLLGFCSNQEINLLVYEYMPNGSXXXXXXXXXXXXXQWATRYKIAVEAAKGLCYLHHDCCPIIIHRDVKSNNILLDSNFEAHVADFGLAKFLQD-SGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRRPVG-EFGDGIDIVQWV-NKMTNSTKEGVSNILDERLSSVPLHDVIHVFCVAMACVEEHSVERPTMREVVQMLSD
Q19AV8_______________KKSVDKSSWMLTSFHRLRFSEYEILDCLDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASNDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKI--EKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
270		25		75	0.996473
278		50		50	1.0
286		75	25		0.996473
522		33		66	1.0
525	66	33			1.0
526	66		33		1.0
527	66			33	1.0
529	33			66	1.0
532	66			33	1.0
533	66			33	1.0
534		66	33		1.0
535	66		33		1.0
538	66			33	1.0
539			33	66	1.0
542	33			66	1.0
545		33		66	1.0
546	66		33		1.0
1709		84		15	0.999986
1812	10		90		0.90298
1813		10		90	0.90298
1814	10	90			0.90298
1816			90	10	0.90298
1844	33			66	0.997452
1846	33			66	0.997452
1847			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain