SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27881

Length: 439 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene27881
AAACTGGACCCTCCCAACAGCAGACGTGCAATTTTTTCAAAAAACCGACAAGGAATAAAAACATAAGAAAACGCGAAGCAGAGGAAGTAACAGAGGAAGAGAACAAGGATGGCTCCGCTGTTGTTCACAAGCCCAAGGCTGCGAAGAAACCTGATAATAAGTTGCACTTTTCATCTGGACCTTCGAAAAAATCTAATATTGAAGATAATGATTCTGAAACAGCGGGGTTACCTGTTTCTACATTTTTTTACGAATCCTCAAAGGAATTCAGGTTCAGAATGACAGCAGGGCAACGGCAACCCTAGAGACAGAGACAGAGTTTACCAAAGATGCCAGGGCTATCCGAGAGCGGGTGCTTAAACAAGGCGAGGAGTCACTCAAGGGTAATAATCCGGGCGATGAAAAACTTTATAAAGGTATTCACGGTTATACCGATCAC

Ace file of the UniGene sp_v2.0_unigene27881

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative zinc finger protein [Arabidopsis thaliana]	-	-	2.0e-11	61%
FL-Next	sp=Zinc finger CCCH domain-containing protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	ring finger protein	-	-	5.94234e-28	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	5.94234e-28	81%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GX84

Fln msg: Overlapping hits, possible frame ERROR between 290 and 260, Distance to subject end: 178 aas, your sequence is shorter than subject: 146 - 343

Fln protein: TGPSQQQTCNFFKKPTRNKNIRKREAEEVTEEENKDGSAVVHKPKAAKKPDNKLHFSSGPSKKSNIEDNDSETAGLPVSTFFYESxxxxxxxxxxxxTATLETETEFTKDARAIRERVLKQGEESLKGNNPGDEKLYKGIHGYTDH

Protein Length: 147

Fln nts: AAACTGGACCCTCCCAACAGCAGACGTGCAATTTTTTCAAAAAACCGACAAGGAATAAAAACATAAGAAAACGCGAAGCAGAGGAAGTAACAGAGGAAGAGAACAAGGATGGCTCCGCTGTTGTTCACAAGCCCAAGGCTGCGAAGAAACCTGATAATAAGTTGCACTTTTCATCTGGACCTTCGAAAAAATCTAATATTGAAGATAATGATTCTGAAACAGCGGGGTTACCTGTTTCTACATTTTTTTACGAATCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACGGCAACCCTAGAGACAGAGACAGAGTTTACCAAAGATGCCAGGGCTATCCGAGAGCGGGTGCTTAAACAAGGCGAGGAGTCACTCAAGGGTAATAATCCGGGCGATGAAAAACTTTATAAAGGTATTCACGGTTATACCGATCAC

Fln Alignment:

Contig27881___QQTCNFFKKPTRNKNIRKR-XXXXXXXXXNKDGSAVVHXXXXXXXXDNKLHFSSGPSKKSNIEDNDSETAGLPV-STFFYESSxxxxxxxxxxXXXXXXXXXXXXKDARAIRERVLKQGEESLKGN--NPGDEKLYKGIHGYTDH
Q8GX84_______________QQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSGPSKSS------TTTSGAPERSVFHYDSSxxxxxxxxxxATATLETETDFNQDARAIRERVLKKADEALKGNKKKASDEKLYKGIHGYTDH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain