SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27730

Length: 927 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27730

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter E family member 2 n=13 Tax=Spermatophyta RepID=AB2E_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	rnase l inhibitor-like protein	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	4Fe-4S binding domain	IPR001450	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	RNase L inhibitor RLI, possible metal-binding domain	IPR007209	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, ABCE	IPR013283	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR96

Fln msg: your sequence is shorter than subject: 284 - 605

Fln protein: RFRDESLTFKVAEIPQESAEEIKSYARYKYPSMSKTHGNFKLDVEEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTIENSEVEIPEFNVSYKPQKISPKFQNSVRILLHQKIRDSYTHPQFTSDVMKPLQIEQLLDQEVVNLSGGELQRVAICLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYDGKPSLECTAHAPQSLQTGMNLFLSHLDITFRRDPTNYRPRINKFDSTKDREQKNAGTYYYLDD*

Protein Length: 285

Fln nts: TCGTTTTCGAGATGAATCACTTACGTTCAAGGTTGCAGAGATTCCGCAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATATCCAAGTATGTCTAAAACACACGGCAATTTCAAACTTGATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAAACCACCTTCATACGCATGCTGGCTGGATTATTAAAACCAGATACAATCGAAAACTCAGAGGTGGAGATACCTGAATTTAATGTGTCATACAAGCCACAGAAGATAAGCCCAAAGTTTCAGAATTCTGTAAGGATTTTATTACACCAAAAGATTCGAGATTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAACAATTATTGGATCAGGAAGTTGTAAATCTTTCAGGTGGAGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTCATTGATGAACCAAGTGCGTACTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGAAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGACAGGGTTATAGTATATGATGGGAAACCCTCTCTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGGCGAGATCCGACGAACTACAGGCCTCGTATAAATAAATTTGATTCAACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAA___TTCTTGTCACTCAGAGTGTAATACACACACGAATGGTCACAAGCCAACAAAATTATGCCTCTCTGTGGCGGCCA

Fln Alignment:

Contig27730___RFRDESLTFKVAEIPQESAEEIKSYARYKYPSMSKTHGNFKLDVEEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTIENSEVEIPEFNVSYKPQKISPKFQNSVRILLHQKIRDSYTHPQFTSDVMKPLQIEQLLDQEVVNLSGGELQRVAICLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYDGKPSLECTAHAPQSLQTGMNLFLSHLDITFRRDPTNYRPRINKFDSTKDREQKNAGTYYYLDD
B8LR96_______________RFRDESLTFKVAETPQESAEEIKSYARYKYPTMSKTQGNFKLNVKEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTVDNTDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFTSDVMKPLQIEQLMDQDVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGRPSVDCVANTPQSLQTGMNLFLSHLDITFRRDPTNYRPRINKLDSTKDREQKNAGSYYYLDD

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
322		20		80	0.995493
424	12			87	0.992554
427			87	12	0.992554
428			87	12	0.992554
480	16		83		0.994512
481		16		83	0.994512
482	16	83			0.994512
565		80		20	0.995493
669	85	14			0.993533
671		85		14	0.993533
672		85		14	0.993533
727	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain