SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27729

Length: 1589 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27729

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Citrate synthase n=1 Tax=Picea sitchensis RepID=D5AAX0_PICSI	-	-	94%
FL-Next	sp=Citrate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	citrate synthase	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Citrate (Si)-synthase.	EC:2.3.3.1	-	0.0	93%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	93%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	93%
Blast2go	Biosynthesis of phenylpropanoids	01061	93%
Blast2go	Biosynthesis of terpenoids and steroids	01062	93%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	93%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	93%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	93%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	93%
Blast2go	Biosynthesis of plant hormones	01070	93%
Blast2go	Metabolic pathways	01100	93%
Blast2go	Biosynthesis of secondary metabolites	01110	93%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	93%
Blast2go	citrate (Si)-synthase activity	GO:0004108	Molecular Function	93%
Blast2go	peroxisome	GO:0005777	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	Citrate synthase-like	IPR002020	-	-
Sma3	Nitrogen regulatory protein PII	IPR002187	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Citrate synthase, type II	IPR010953	-	-
Sma3	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	-
Sma3	Citrate synthase-like, large alpha subdomain	IPR016142	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAX0

Fln msg: your sequence is shorter than subject: 372 - 509

Fln protein: LLMYGNLPSQSQLADWEFNISQHSAAPEGVLDIIQAMPHDAHPMGMLVSAISALSTFHPDANPALRGQDLYNSKSIRDKQISRVLGKVPTIAAAAYLRMAGRPPVLPSSNLSYSENFLYMLDSLGDRSYKPNPRLARAIDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGATGALYGPLHGGANEAVLRMLNEIGTIDNIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRNLAEEVFSIVGRDPLIEVAVALERAALSDEYFIKRKLYPNVDFYSGLIYRALGFPTEFFPVLFAIPRMAGYLAHWKESLDDPDTKIMRPQQWYTGVWLRHYTPLNKREVSEEADKLGQVAVSNATRRRRAGLIA*

Protein Length: 373

Fln nts: CTCTTAATGTATGGAAATCTTCCTTCTCAGTCCCAGTTAGCAGATTGGGAATTCAATATTTCCCAACATTCAGCAGCGCCCGAGGGAGTATTGGATATCATACAAGCAATGCCTCATGATGCTCATCCAATGGGTATGCTTGTTAGTGCAATAAGTGCACTTTCTACATTTCATCCAGATGCCAATCCAGCATTAAGGGGACAAGATCTTTACAATTCAAAGTCCATTCGAGACAAGCAGATTTCACGTGTCTTGGGAAAGGTACCAACTATAGCAGCGGCTGCATACTTGAGAATGGCGGGGAGACCACCTGTCTTACCTTCCAGTAACCTTTCTTATTCAGAGAATTTTCTATATATGTTGGATTCACTGGGTGACAGATCATATAAACCCAATCCTCGACTAGCAAGAGCCATTGATGTACTTTTCATCTTGCATGCGGAGCATGAAATGAACTGTTCAACAGCTGCTGCACGTCACCTTGCTTCCAGTGGTGTTGATGTCTATACTGCTCTTGCTGGGGCGACTGGTGCGTTGTATGGTCCTTTGCATGGAGGGGCAAATGAGGCGGTTCTCAGAATGCTTAATGAAATTGGCACAATTGATAACATTCCAGAGTTCATTGAGGGTGTGAAAAACAGGAAAAGAAAAATGTCTGGTTTCGGTCATCGAGTATACAAGAATTATGATCCACGTGCTAAGGTTATTCGCAATTTAGCAGAAGAAGTGTTCTCTATTGTTGGACGTGATCCTTTGATTGAGGTGGCTGTGGCATTAGAGAGGGCTGCACTTTCAGATGAGTACTTTATTAAGAGGAAGCTCTACCCAAATGTTGATTTTTATTCAGGCTTAATTTACAGGGCACTGGGTTTCCCGACTGAATTCTTCCCAGTCCTATTTGCCATTCCACGTATGGCTGGTTATCTCGCTCATTGGAAGGAGTCACTTGATGATCCAGATACAAAAATCATGAGGCCACAACAGTGGTACACTGGGGTGTGGCTTCGGCACTATACACCTTTGAACAAGAGGGAAGTTTCAGAGGAGGCTGACAAGCTTGGTCAAGTAGCTGTTTCTAATGCAACAAGAAGACGCCGTGCTGGACTGATTGCATGA___TTATGATTGGTGTTGGTGATGAAATTTGTTGGTAGCTTCTTGTTCCACAATTATTCATTGTGGAAGATCATGAAAATTTCATTAAGCAGCATGGTGTTAATTTATCAGTTTTTACTTGAAAAATGATCAATGCCTACAGATCCTTTTTTCCAGCTCGATATAGAGGTCTGGTTCTTGCATCATTTTCTTTGTGACTATCATATAGTTCATCTACACACTATCAAACAAAGAGTTCGAGCAGTTGAAATTTATGAGACCATGCACTTGCAATCTAGTTTGCCAGTGTGAAACTCTAATAATTTTTCTGGCATTATCATTTATGTAAGAAAGAGCCAACATTATGCTTTTAAACGTGTATACAATGAGTTACCCTTGGCATGTGGTAATTGTGGTCTCTTCAGCGTTGAGTATACGGTTAGCTCTGTACAGTGCTAGCTGTGTGGTATCCTAATCCAACTCTAATAAAACTAGTA

Fln Alignment:

Contig27729___LLMYGNLPSQSQLADWEFNISQHSAAPEGVLDIIQAMPHDAHPMGMLVSAISALSTFHPDANPALRGQDLYNSKSIRDKQISRVLGKVPTIAAAAYLRMAGRPPVLPSSNLSYSENFLYMLDSLGDRSYKPNPRLARAIDVLFILHAEHEMNCSTAAARHLASSGVDVXXXXXXXXXXXXXPLHGGANEAVLRMLNEIGTIDNIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRNLAEEVFSIVGRDPLIEVAVALERAALSDEYFIKRKLYPNVDFYSGLIYRALGFPTEFFPVLFAIPRMAGYLAHWKESLDDPDTKIMRPQQWYTGVWLRHYTPLNKREVSEEADKLGQVAVSNAT
D5AAX0_______________LLMYGNLPSQSQLADWEFNVSQHSAAPEGVLDIIQAMPHDAHPMGMLVSAISALSTFHPDANPALRGQDLYNSKSIRDKQIARVLGKVPTIAAAAYLRMAGRPPVLPSSNLSYSENFLYMLDSLGDRSYKPNPRLARALDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGATGALYGPLHGGANEAVLRMLNEIGTVDNIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRNLAEEVFSIVGRDPLIEVAVALERAALSDEYFIKRKLYPNVDFYSGLIYRALGFPTEFFPVLFAIPRMAGYLAHWKESLDDPDTKIMRPQQWYTGVWLRHYTPVNKREASEEADKLGQVAVSNAT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
465	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain