SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27553

Length: 1298 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27553

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione S-transferase-like protein n=13 Tax=Picea sitchensis RepID=C0PR46_PICSI	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	glutathione s-transferase-like protein	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQV4

Fln msg:

Fln protein: MAAIKVHGFHASTTTNMVLCCLNEKQVEYNFVPVDLLTGAHKKPQYLALNPFGVVPTIQDGDLTLFESRAILRYLAQKFKGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPVSTIVSQILVVPRRGGSTDEAAVEMNIEKLGKVLDIYELSKSKYLAGDFFSLADLQHLPHTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWQKVAENMKFN*

Protein Length: 216

Fln nts: GTTTCTTTCATATTCACGTCAATTTTAAATCCGTTTTCCTGACATCGTTCTATCCATACAGGCAATGGGGCTCCCGAGCAACACCGTCCCGGAAATGGACGATCCGAGCAGCTGGAATGTGAAGAATTTATTGAAAATATCGGAGGATATGCTCAACCAGAAGAGCTTGGAGACCATTCCCTTCGGCGGCAAGAGACTCCTCTCACAGACCAATGCCGAGCGCCTGGAGTGGTTCGCGGACGAGCTCATTCTGGAGCACAGAAGTCGCGCAATAAGGGAAACCCCTACAGTTGTTCTCAAGCAGAGCCCAGCCACAACTGCCACCACCACCGCTGCTTCTTCTCCTTATCCTTCCTCTTCTTCGTTTTCAGAATCTGAGAGGGAGAAACAGAGAGAGATTCA_-_ATGGCGGCGATCAAAGTGCATGGTTTTCACGCCTCCACGACCACCAATATGGTGCTGTGCTGTTTGAATGAGAAACAAGTTGAGTACAACTTCGTCCCGGTCGATCTCCTTACTGGTGCTCACAAGAAACCCCAATATCTGGCTCTCAATCCATTTGGGGTAGTACCCACAATCCAAGATGGGGATCTCACCTTATTTGAGTCAAGAGCCATTCTCAGGTATTTGGCCCAAAAGTTCAAGGGGCAGGGCACAGATCTCTTGGGAAGTACCCTGTCTGAAGAAGCCCTGGTTTATCAATGGTGTGAGGTGGAAGGGCAGTCGTTCAATCCCCCTGTTTCGACCATAGTTTCTCAAATCCTGGTCGTCCCAAGGAGGGGAGGCAGCACAGACGAAGCAGCAGTGGAGATGAATATAGAGAAGCTGGGAAAAGTGTTGGATATTTACGAATTATCAAAGAGCAAGTACTTGGCCGGTGATTTCTTCAGCTTGGCCGACCTCCAACATCTGCCCCATACTCACTACCTCGTCAACGCTTGCGGAAAGGGTGATCTCATATCTTCCAGGAAGCATGTGAATGCATGGTGGGAGGACATTTCCAGTCGCCCTACCTGGCAGAAAGTTGCAGAAAATATGAAATTTAATTGA___GAGTAAAGATTTTATGTGTATCTATGTATGCATGGCAGGCAGTAATTAAATAAAATGTGGGGATCCTATTTATATGTAACGATCCCTCATAGAGGTTAATAAAGCTTTACTTCTCAGTCATTCATGGCCACAAGCACACTCTGCATCTGAAACATTAAGAATGAAGATAAGCTTTTATGAGGATGTTAGCATTTACTGTATTTATCAAAACAACATATATTTAAGTATCTTAAAAATTCAGGGAATTTTGG

Fln Alignment:

Contig27553___MAAIKVHGFHASTTTNMVLCCLNEKQVEYNFVPVDLLTGAHKKPQYLALNPFGVVPTIQDGDLTLFESRAILRYLAQKFKGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPVSTIVSQILVVPRRGGSTDEAAVEMNIEKLGKVLDIYE--LSKSKYLAGDFFSLADLQHLPHTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWQKVAENMKF
A9NQV4_______________MAAIKVHGYHASTATVMVLCCLNEKEVEYELVLVDLPTGAHKKPEYLALNPFGVVPTIQDGDLTLYESRAIIRYLAKKFQGQGTDLLGSTLSEEALVYQWCEVEGQSFNPPALSIVSQILVVPMRGGSTDEAAVEMNVEKLEKVLDIYEERLSKSKYLAGDFFSLADLQHLPCTHYLVNACGKGDLISSRKHVNAWWEDISSRPTWKKVAENMKF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
265	22			77	0.999999
266		77		22	0.999999
268		77	22		0.999999
269			88	11	0.923564
311	11		88		0.923564
391	33		66		1.0
407		88		11	0.923564
442	37		37	25	1.0
490	14		85		0.993533
500		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain