SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27500

Length: 2034 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene27500
TGGGGTTTATTTTGAAAATCAACCGAAAATGGCTCTGAGCAGCGCTACTGATTCTGATGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCAGGAATCCTTGCCTCGGTTTCAAATTCCGAGTAGGTCGATTCCCAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCACCACATGGATGGAACCAGAATGTGATAAGCTCATCATGCAGGCAATCAACAAGAATTATGTCGACATGGATGAGTATCCTGTCACTACAGAATTGCAGAATCGATGCGTGAACATTATAGCCAATCTGTTTAACGCCCCACTTGGCGATGGAGAGGAAGCTGTTGGTGTGGGCACGGTTGGATCTTCAGAGGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAAACGCAAGGCAGAGGGGAAGCCGTATGACAAGCCAAACATTGTGACAGGTGCAAATGTCCAGGTGTGCTGGGAGAAATTTGCTCGTTATTTTGAAGTAGAGCTGAAGGAAGTTAAACTGAAGAAGGATTACTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTGGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGGTGAACGATCTCCTCATCCAGAAAAACAAGGAAACAGGGTGGGACACGCCCATCCATGTGGACGCCGCTAGCGGCGGATTTATTGCACCGTTCCTGTACCCTGAGTTGGAATGGGATTTCCGGCTTCCATTGGTGAAGAGCATCAACGTCAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATCGGATGGGTTATCTGGAGAGCAAAGCAAGATCTCCCTGAGGAGCTCATCTTTCACATCAATTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAACTTCTCCAAAGGTGCCAGCCAAATAATTGCGCAATATTACCAACTCATACGTCTAGGGTTCGAGGGCTACCGAAATATCATGGGCAACTGCGCGGCAAACGCCAAGGCTCTGTCAGATGGTTTGGTGAGGACCGGGCGGTTCAACATTCTGTCGAAGGAGATCGGGGTCCCTCTGGTGGCGTTTTCGCTAAAGGACAGTAGCAGGCACGATGAGTATGAGATTTCTGACCACCTGAGAAGGTTTGGTTGGATCGTGCCCGCGTACACCATGGCTCCCGACGCACAAGAGGTGAAGCTTCTGCGTGTGGTGGTTCGCGAAGATTTCAACCGGAGCCTGGCAGAACGACTGGTTCATGACATCGAGAAGGTGTTGCATGAACTTGACACGCTTCCTTCAAAGATAGCGAGGGAAGTGGTTGCGTCTCTGGTAGATGGCCATCCAGAGCTCAAAGAAGTCAAAGACCTAGGTATAGATGTCACCCAGTTTAAGTCCTCTGCTGTGTTCAACGAAATCGTTAACTCCCAGAAGGCCGTAAAGGCATGGAAGAAATTTGTTGCGCAGAAGGCCAATCGTGTTTGCTGAAGAGCCCCATTCAAATGGCTGAAAGATTGAAGTTTTTGTTTTGTTAGGCTCATGGTCGTTGCACGATGCGACGTCCGCACTATTATCATTAATTATTTTTGTTTTGTTATCCTCATCGTCGTTGCACGATGCGACCTCCGCACTATTACCATTATTTTACTTCCATTCAACCTGTAGCTGTCTCTGTATAAGAGATTTGTCAAAGCTGAGTTTATAGGTGGCTTGCACGACTTTTGCAGGTCCAGTAATGAGAAAAATAGTTTTGTTCTTCACGCGTATGCTTTAGAACATTTCAGCGCGATTTCTGTGTTCCAAAAATAATAATGTCACATCTATGTGCCAATTTCACCGACTCTTGAATACGATTGATACTGTATGTCATGGAAAAATGTTCCTGCATATTTGGTGGCAGACATGATCTCTTCAACCAAAAACAGACACGTCTCTCCTCCGTAACAGCAATGAACACAAGATTT

Ace file of the UniGene sp_v2.0_unigene27500

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	97%
FL-Next	tr=Glutamate decarboxylase; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	glutamate decarboxylase	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	87%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutamate decarboxylase	IPR010107	-	0.0	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A0EJ89

Fln msg:

Fln protein: MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDAQEVKLLRVVVREDFNRSLAERLVHDIEKVLHELDTLPSKIAREVVASLVDGHPELKEVKDLGIDVTQFKSSAVFNEIVNSQKAVKAWKKFVAQKANRVC*

Protein Length: 511

Fln nts: TGGGGTTTATTTTGAAAATCAACCGAAA_-_ATGGCTCTGAGCAGCGCTACTGATTCTGATGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCAGGAATCCTTGCCTCGGTTTCAAATTCCGAGTAGGTCGATTCCCAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCACCACATGGATGGAACCAGAATGTGATAAGCTCATCATGCAGGCAATCAACAAGAATTATGTCGACATGGATGAGTATCCTGTCACTACAGAATTGCAGAATCGATGCGTGAACATTATAGCCAATCTGTTTAACGCCCCACTTGGCGATGGAGAGGAAGCTGTTGGTGTGGGCACGGTTGGATCTTCAGAGGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAAACGCAAGGCAGAGGGGAAGCCGTATGACAAGCCAAACATTGTGACAGGTGCAAATGTCCAGGTGTGCTGGGAGAAATTTGCTCGTTATTTTGAAGTAGAGCTGAAGGAAGTTAAACTGAAGAAGGATTACTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTGGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGGTGAACGATCTCCTCATCCAGAAAAACAAGGAAACAGGGTGGGACACGCCCATCCATGTGGACGCCGCTAGCGGCGGATTTATTGCACCGTTCCTGTACCCTGAGTTGGAATGGGATTTCCGGCTTCCATTGGTGAAGAGCATCAACGTCAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATCGGATGGGTTATCTGGAGAGCAAAGCAAGATCTCCCTGAGGAGCTCATCTTTCACATCAATTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAACTTCTCCAAAGGTGCCAGCCAAATAATTGCGCAATATTACCAACTCATACGTCTAGGGTTCGAGGGCTACCGAAATATCATGGGCAACTGCGCGGCAAACGCCAAGGCTCTGTCAGATGGTTTGGTGAGGACCGGGCGGTTCAACATTCTGTCGAAGGAGATCGGGGTCCCTCTGGTGGCGTTTTCGCTAAAGGACAGTAGCAGGCACGATGAGTATGAGATTTCTGACCACCTGAGAAGGTTTGGTTGGATCGTGCCCGCGTACACCATGGCTCCCGACGCACAAGAGGTGAAGCTTCTGCGTGTGGTGGTTCGCGAAGATTTCAACCGGAGCCTGGCAGAACGACTGGTTCATGACATCGAGAAGGTGTTGCATGAACTTGACACGCTTCCTTCAAAGATAGCGAGGGAAGTGGTTGCGTCTCTGGTAGATGGCCATCCAGAGCTCAAAGAAGTCAAAGACCTAGGTATAGATGTCACCCAGTTTAAGTCCTCTGCTGTGTTCAACGAAATCGTTAACTCCCAGAAGGCCGTAAAGGCATGGAAGAAATTTGTTGCGCAGAAGGCCAATCGTGTTTGCTGA___AGAGCCCCATTCAAATGGCTGAAAGATTGAAGTTTTTGTTTTGTTAGGCTCATGGTCGTTGCACGATGCGACGTCCGCACTATTATCATTAATTATTTTTGTTTTGTTATCCTCATCGTCGTTGCACGATGCGACCTCCGCACTATTACCATTATTTTACTTCCATTCAACCTGTAGCTGTCTCTGTATAAGAGATTTGTCAAAGCTGAGTTTATAGGTGGCTTGCACGACTTTTGCAGGTCCAGTAATGAGAAAAATAGTTTTGTTCTTCACGCGTATGCTTTAGAACATTTCAGCGCGATTTCTGTGTTCCAAAAATAATAATGTCACATCTATGTGCCAATTTCACCGACTCTTGAATACGATTGATACTGTATGTCATGGAAAAATGTTCCTGCATATTTGGTGGCAGACATGATCTCTTCAACCAAAAACAGACACGTCTCTCCTCCGTAACAGCAATGAACACAAGATTT

Fln Alignment:

Contig27500___MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDAQEVKLLRVVVREDFNRSLAERLVHDIEKVLHELDTLPSKIAREVVASLVDGHPELKEVKDLGIDVTQFKSSAVFNEIVNSQKAVKAWKKFVAQKANRVC
A0EJ89_______________MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDAQEVKLLRVVVREDFNRSLAERLVHDIEKVLHELDTLPSKIAREVVASLVDGHPELKEVKDLGIDVTQFKSSAVFNEIVNSQKAVKAWKKFVAQKANRVC

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
976		16		83	0.994512
996	83		16		0.994512
1018	80		20		0.995493
1048	80		20		0.995493
1078		20		80	0.995493
1124		42		57	1.0
1156	42		57		1.0
1374	86			13	0.999973
1376	86		13		0.999973
1377			13	86	0.999973
1559	20		80		0.999996
1584	11			88	0.923564
1605			50	50	1.0
1647	14			85	0.993533
1908	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain