SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27495

Length: 552 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene27495
CCAGTAAGCAAATTTGTTAAGATGTAAGGACCTTTAGCGAGTGAAAATGGGACGTCTGAACTGCTTACTTTTCCGTCGAATATTTCGAGGCCACCAATATTTGTTGGCCTACAGACTGGCCATGTGACCGACACGATTGTAGATTTCATAAATTCCATTGCCGACCACATGAAGGGGATAAAGTTATTTTTATTGACGTGTGGAGGCGGTACACTTGAAACTGAGACCGGCATCTTTCTTCACTTGTTGCTCAGAATTGCTCGTGATCCAGCAGAATTGCTCAGATCTCTTTGTGATCTACCAGAATTGCCATGGGAAGCCCAAGGCCTCATCTGGTCATCTTCCCCAGCGCGGGCATAGGCCATCTCATCCCCCTTGTAGAGCTCGCGAAACGTCTCTCGGAAGGGCATGGACTGTCCGTGACCTTCATGACATGCCAATGGATGTTCCCCTCTCATCTCATCGCCGCTTTCTCCGACAGCATGGCGGCCGCGTCACTGGACATCACCTTTGTCCAGCTGCCGCCGGCCGAGGTGGAGATCGAAGGCGCAG

Ace file of the UniGene sp_v2.0_unigene27495 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glycosyltransferase 72B3 n=1 Tax=Arabidopsis thaliana RepID=U72B3_ARATH	-	-	7.0e-08	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	hydroquinone glucosyltransferase	-	-	7.35232e-33	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	7.35232e-33	62%
Blast2go	xenobiotic catabolic process	GO:0042178	Biological Process	7.35232e-33	62%
Blast2go	response to toxin	GO:0009636	Biological Process	7.35232e-33	62%
Blast2go	quercetin 3-O-glucosyltransferase activity	GO:0080043	Molecular Function	7.35232e-33	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT89

Fln msg: Distance to subject end: 411 aas, your sequence is shorter than subject: 80 - 490

Fln protein: MGSPRPHLVIFPSAGIGHLIPLVELAKRLSEGHGLSVTFMTCQWMFPSHLIAAFSDSMAAASLDITFVQLPPAEVEIEGA

Protein Length: 81

Fln nts: CCAGTAAGCAAATTTGTTAAGATGTAAGGACCTTTAGCGAGTGAAAATGGGACGTCTGAACTGCTTACTTTTCCGTCGAATATTTCGAGGCCACCAATATTTGTTGGCCTACAGACTGGCCATGTGACCGACACGATTGTAGATTTCATAAATTCCATTGCCGACCACATGAAGGGGATAAAGTTATTTTTATTGACGTGTGGAGGCGGTACACTTGAAACTGAGACCGGCATCTTTCTTCACTTGTTGCTCAGAATTGCTCGTGATCCAGCAGAATTGCTCAGATCTCTTTGTGATCTACCAGAATTGCC_-_ATGGGAAGCCCAAGGCCTCATCTGGTCATCTTCCCCAGCGCGGGCATAGGCCATCTCATCCCCCTTGTAGAGCTCGCGAAACGTCTCTCGGAAGGGCATGGACTGTCCGTGACCTTCATGACATGCCAATGGATGTTCCCCTCTCATCTCATCGCCGCTTTCTCCGACAGCATGGCGGCCGCGTCACTGGACATCACCTTTGTCCAGCTGCCGCCGGCCGAGGTGGAGATCGAAGGCGCAG

Fln Alignment:

Contig27495___MGSPRPHLVIFPSAGIGHLIPLVELAKRLSEGHGLSVTFMTCQWMFPSHLIAAFSDSMAAASLDITFVQLPPAEVEIEGA
C0PT89_______________MESPKLHVVIFPSAGIGHLTPFAELAKRLSECHGLSVTFMTCQWMFSSHLIAAFSERMASASLDITFVQL-PADVEIEGA

SNPs (tot: 4)

Position	A %	C %	T %	Probability
122		25	75	0.996473
269	10		90	0.90298
270	10	90		0.90298
273	90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain