SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27479

Length: 1306 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27479

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1777 multi-domain protein	-	-	2.0e-16	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	unknown [Picea sitchensis]	-	-	1.39931e-12	89%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
209	33			66	0.997452
210		66		33	0.997452
212		66	33		0.997452
213	66		33		0.997452
243	66		33		0.997452
268		75	25		0.996473
269	75			25	0.996473
270	75	25			0.996473
275		25	75		0.996473
276	75	25			0.996473
277	75			25	0.996473
278			75	25	0.996473
280			25	75	0.996473
282	75			25	0.996473
283	75		25		0.996473
284			75	25	0.996473
285	75	25			0.996473
287		25	75		0.996473
288		75		25	0.996473
290	25		75		0.996473
388	88		11		0.923564
400		25	75		1.0
401	83		16		0.999991
408	83			16	0.999991
409	83			16	0.999991
411			16	83	0.999991
412		16	75	8	0.99999
539	60	5			1.0
585	73		26		1.0
845		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain