SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27436

Length: 826 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27436 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 10B homolog A n=2 Tax=Arabidopsis RepID=PS10A_ARATH	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	26s protease regulatory subunit	-	-	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	NSF attachment protein	IPR000744	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
457	12	87			0.992554
459			12	87	0.992554
460		87		12	0.992554
552	90	10			0.90298
597	62		37		1.0
600	42	57			1.0
605		42		57	1.0
606	42			57	1.0
607	42	57			1.0
608			42	57	1.0
615	50		50		1.0
618	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain