SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27357

Length: 1219 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27357

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonoid 3'-hydroxylase n=1 Tax=Pelargonium x hortorum RepID=Q9FPM9_PELHO	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	flavonoid 3 -hydroxylase	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLA5

Fln msg: your sequence is shorter than subject: 310 - 528

Fln protein: AALLAVASVEEFKKIITVSTSELLGAFNLGDYIPLLRWLDLQGCERAMKKLHRRRDEFLHRVIDNSRLCMKKENDDSLIDVLLHLVDKAEDFCGEDAIVKATAISMIIASTDTYANTTEWAMATLLQRSDVLKRAQEELDVIVGKERILEESDLAKLKYLEAIVKETLRLYPAAPLLLPHVTAAPCRVGGYYVPEGTEVLFNAWGTHRDPAVWESPLKFEPERFINSSIDVNGHDFTYIPFGYGRRACPGIWLAMRMLLLTVGRLLQGFDWSIPEGTEGVDMNEGRAVTLHRAVPLEAAIRPRLPHHLY*

Protein Length: 311

Fln nts: GCTGCGCTTCTGGCGGTTGCAAGTGTGGAAGAATTTAAAAAGATAATTACAGTCAGCACTAGCGAGCTGCTGGGAGCGTTTAATTTGGGGGATTATATTCCACTCCTTAGATGGCTGGATCTCCAGGGCTGCGAGCGGGCAATGAAGAAGTTACACAGGCGACGGGATGAGTTTTTGCATAGAGTGATAGATAACAGCCGGCTTTGTATGAAGAAGGAGAATGACGACAGTCTGATAGATGTGCTTCTACATTTGGTGGACAAAGCCGAAGATTTTTGCGGCGAAGACGCTATTGTCAAGGCCACTGCTATAAGCATGATCATTGCATCAACGGATACCTACGCCAATACAACGGAATGGGCTATGGCAACGCTCCTGCAACGCTCGGATGTGCTGAAAAGGGCACAGGAGGAGCTCGACGTCATAGTTGGAAAGGAGCGCATTTTGGAGGAATCGGATCTCGCGAAGTTGAAGTATTTGGAAGCCATCGTGAAAGAGACTCTACGTCTCTATCCAGCGGCGCCTCTGCTCCTCCCTCATGTTACAGCGGCGCCGTGCAGAGTGGGAGGGTATTATGTACCAGAGGGCACAGAGGTTTTGTTCAACGCGTGGGGTACACACAGAGACCCAGCTGTGTGGGAAAGCCCCCTAAAATTCGAGCCGGAGAGGTTTATCAACAGTTCCATAGACGTGAACGGACATGATTTCACATATATACCGTTTGGTTATGGGAGAAGGGCCTGCCCGGGCATTTGGTTAGCCATGCGCATGCTTCTGCTCACAGTGGGAAGACTGTTGCAGGGTTTCGATTGGAGCATTCCCGAAGGAACTGAAGGAGTTGATATGAATGAAGGTCGTGCTGTTACGCTGCACAGAGCTGTTCCATTGGAGGCGGCCATCAGGCCTCGTCTTCCTCACCATCTGTATTGA___GTCATCACCTCACCTGATCTGTGATGTTAATGAATTGAGAAACATAGGTACGCTCTTCTCAAATCTCCAAATTTGATATTAGCTACCGTTTTGCATGACCATTCAGACTCCAGAGTCGTATTATTATTGTGTATAAGTGTAGCAGCAGTCCTTTTCCAGACCGTCCAATTTGGCCGCGGACCCTTGAAGGCATTCATATAAGTGGTTAGTTGGAATATTTTATTGGGATGGTGGTTCGCAATATCCTGGATGATAATAATAAAGTTACAATAATTTATTGGAGTAGATT

Fln Alignment:

Contig27357___AVASVEEFKKIITVSTSELLGAFNLGDYIPLLRWLDLQGCERAMKKLHRRRDEFLHRVIDNSRLCMKKENDDSLIDVLLHLVDKAEDFCGEDAIVKATAISMIIASTDTYANTTEWAMATLLQRSDVLKRAQEELDVIVGKERILEESDLAKLKYLEAIVKETLRLYXXXXXXXXHVTAAPCRVGGYYVPEGTEVLFNAWGTHRDPAVWESPLKFEPERFINSSI-DVNGHDFTYIPFGYGRRACPGIWLAMRMLLLTVGRLLQGFDWSIPEGTEGVDMNEGRAVTLHRAVPLEAAIRPRLPHHLY
B8LLA5_______________SVEEVEEFKEIITVTTSELLGAFNLGDYIPFLRWLDLQGCERAMKKLNRRRDKFLQRAIDNSRLCIKEENDESLIDVLIHLVDKAEDFFSDEAIVKATAISIIIGATDTYANTTEWALATLLQRPEVLKRAQEELDVVVGSERVLEESDLPNLKYLEAIVKETLRLYPAGPLLLPHMAAAPCIVGGYYVPAGTELLLNAWGIHRDPAVWERPLEFEPERFLNSSSPDLNGHDFKYIPFGYGRRACPGMWVALRMLLLTVGRLLQSFDWSIPDGIEGVDMNEGRALTLHKAVPLEAAIKPRLPQHLY

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
754	20			80	0.995493
756		20	80		0.995493
757	20			80	0.995493
758			20	80	0.995493
760	20		80		0.995493
761		80	20		0.995493
762		80	20		0.995493
783	80	20			0.995493
918		80		20	0.995493
959	60		40		1.0
965			25	75	0.996473
975		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain