SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27295

Length: 1900 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene27295 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8SWR5_SELML	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	gtp binding protein	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015599	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
783	86	13			0.999973
805		14	85		0.999981
806	85	14			0.999981
807	85	14			0.999981
809	14		85		0.999981
810	85			14	0.999981
832	88	11			0.923564
833	88	11			0.923564
834		11	88		0.923564
836	88			11	0.923564
840	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain