SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27182

Length: 2386 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene27182
CGAAAGGTGGGAAATCAGTATTTGACTCGTGAGGAGAATGTAGAATGTTGAGCCCGCGCGCATCATCGATCAAACGGGATGAATCTGAATCCGTTTCTTTTGTGGGGATCACACCAGGATGGGATAACAGAGCCCAAAAATTGTAGCAAAAACATATTGGAAACAACATAGAAATATGATATTAGGTGCCAGGGGAATTACGATTTCTTCAAAGCAGATCCTTTTCCAGATCTCAATGGAGCCACTGGTGGGAGATAAGTACAGATTGGGGCGCAAAATTGGCAGCGGTTCATTCGGAGAAATCTATCTCGGAGTAAATATTCAGACAAATGAGAAGTGGCCATAAAACTGGAGAATGCAAAAACAAAGCACCCACAACTTCTATATGAGTCCAAATTGTACAAGATTCTCCAAGGAGGAACTGGTGTTCCGAATATAAGATGGTCCGGTGTTGAAGGTGATTATAATGTCATGGTCATAGATATACTTGGACCTAGTCTCGAGGATTTATTTAACTACTGCAACCGGAAATTCTCATTGAAGACTGTTCTGATGCTTGCTGATCAACTGATTAACAGGATTGAATATGTGCATTCAAAGAGTTTCCTTCATCGAGATATTAAGCCTGACAATTTCCTTATGGGGCTTGGCCGCAGAGCAAATCAGTGTTACATCATAGATTTTGGGCTTGCCAAAAAATATCGGGACCCAGCAACTCATAAGCATATTCCTTACAGGGAAAATAAAAATCTTACAGGGACTGCTCGTTATGCTAGCATCAATACTCATCTTGGAATAGAGCAAAGTAGGAGAGATGATCTAGAGTCCTTGGGATACATGCTTATGTATTTCTTGAGGGGAAGCCTTCCATGGCAGGGATTGAAAGCTGGGACCAAAAAGCAGAAGTATGAGAAAATAAGTGAGAAAAAAATGTCAACTCCAATTGAGGTGCTGTGCAAATCTTATCCGAAGGAGTTTGCATCATTTTTCCATTATTGTCGGTCTTTGCGATTCGATGACAAGCCAGATTATGCTTACCTGAAGGTTTTATTTCGTGAACTTTTCATTCGTGAGGGTTTTCAGTTTGATTTTGTATATGATTGGACTATATTGAAGTACCAGCAGTCCCAGATTGCTACTGCTGACCCTCGTTCCCATCCTGCTCTTGTAGCTGGAAAGTTTGGCACAGGGGCTGGTGCTTCAGAGAGAATTTCAGCGGGGCAGGATGGCCGTGAGCGAAAGTCTGGAACAGGTGAAGGATCTCATCGAAGATCTAATGGGGGTAATGGTAATCTTCACAATATTGGTTCAGCAGATCAATATAGAAACAAGAATTTAGGGCTGGATGGCCCTTCAACATCAAAAGAAGTCCCAGACAGTGACCGTGGGCGTTCCTCCTTTACACGAGCTGGGAGTTCATCCAGGAGGGCAGTTGCTTCAAGCAGGCCGACTACAGCTGCTGATAATAGTGAGCGCTCCCGTTCCCTAACAAGTAGATTTGTTCCCAGGAGTCTTCGCTCTTCAAGTGCACAGCGCAGTTCAACACCAGCTACATCTGAGCCGAGAAGGATATTTGGTATTCGAAATGCATCAATGAAGGGCACGCCTGAGGATTCACTGAGGAGTTTTCAGTACTTGTCTGTAGATTCAGGACAGAAGCAGTGATAAGTAATTTGTCCAATTTTATGATTTTCGGGGAATTGAAAAGGTCTGTTCTAGCTTGGTATATCTAATTGGCCAATTCCGCTGTCATTTGTTCTTGCTGTTTGAGATTAAGTCCTTACAAGAGGAATATATTTAAAATTAATCATAGGCTGGCCTTGATGGGGAAAGCAAATTCATACGTTTCGTGCATCTACATCGAGGATGAGCAGTTAAAAGACAAAGGAAAGCAGCCGAAGAGAGTGCATGCTTGACCAAACATTGTCTCAATGGGCCCTATTTTAAATTGTTGCTTGCCATTCATCATTTCTTGGGCATGTAATTCGTAGTCAACTCAGACAGCATACAACAAAACCCCAAGCTTCTATCCTGATTAGCTGTTTGGTTTCTCTATTTTACATAAATACGTATCGAGCTCTCATTTATCTCAATTTGGGTCTATCGAATTTAAAATAGAAGTTATTGTATGGTTAAATATGGTTGAAATCACTGCCTGTCCATGCAGAATCGAAAAAATGTTCTGTGTACCTTCCAAGGCAACTGCCAATTTGTTGAGTTTAATGTATTTGTACCTGTCTTGCTCAGAATGCTTGCATATGTCCATCTCTGACTTGGCCTTCCAAATCAGATTACTGTGAGATAAAGTTTGAAAGTAAGAAGAGACAGAATGGAATAGTGGCTTGTTGTAAAGGGAAATATCTATTTCTTTTCATTTTTCACCCAT

Ace file of the UniGene sp_v2.0_unigene27182

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase [Beta vulgaris]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg: Overlapping hits, possible frame ERROR between 337 and 334,

Fln protein: MILGARGITISSKQILFQISMEPLVGDKYRLGRKIGSGSFGEIYLGVNIQTNxxxAIKLENAKTKHPQLLYESKLYKILQGGTGVPNIRWSGVEGDYNVMVIDILGPSLEDLFNYCNRKFSLKTVLMLADQLINRIEYVHSKSFLHRDIKPDNFLMGLGRRANQCYIIDFGLAKKYRDPATHKHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYMLMYFLRGSLPWQGLKAGTKKQKYEKISEKKMSTPIEVLCKSYPKEFASFFHYCRSLRFDDKPDYAYLKVLFRELFIREGFQFDFVYDWTILKYQQSQIATADPRSHPALVAGKFGTGAGASERISAGQDGRERKSGTGEGSHRRSNGGNGNLHNIGSADQYRNKNLGLDGPSTSKEVPDSDRGRSSFTRAGSSSRRAVASSRPTTAADNSERSRSLTSRFVPRSLRSSSAQRSSTPATSEPRRIFGIRNASMKGTPEDSLRSFQYLSVDSGQKQ*

Protein Length: 498

Fln nts: CGAAAGGTGGGAAATCAGTATTTGACTCGTGAGGAGAATGTAGAATGTTGAGCCCGCGCGCATCATCGATCAAACGGGATGAATCTGAATCCGTTTCTTTTGTGGGGATCACACCAGGATGGGATAACAGAGCCCAAAAATTGTAGCAAAAACATATTGGAAACAACATAGAAAT_-_ATGATATTAGGTGCCAGGGGAATTACGATTTCTTCAAAGCAGATCCTTTTCCAGATCTCAATGGAGCCACTGGTGGGAGATAAGTACAGATTGGGGCGCAAAATTGGCAGCGGTTCATTCGGAGAAATCTATCTCGGAGTAAATATTCAGACAAATxxxxxxxxxGCCATAAAACTGGAGAATGCAAAAACAAAGCACCCACAACTTCTATATGAGTCCAAATTGTACAAGATTCTCCAAGGAGGAACTGGTGTTCCGAATATAAGATGGTCCGGTGTTGAAGGTGATTATAATGTCATGGTCATAGATATACTTGGACCTAGTCTCGAGGATTTATTTAACTACTGCAACCGGAAATTCTCATTGAAGACTGTTCTGATGCTTGCTGATCAACTGATTAACAGGATTGAATATGTGCATTCAAAGAGTTTCCTTCATCGAGATATTAAGCCTGACAATTTCCTTATGGGGCTTGGCCGCAGAGCAAATCAGTGTTACATCATAGATTTTGGGCTTGCCAAAAAATATCGGGACCCAGCAACTCATAAGCATATTCCTTACAGGGAAAATAAAAATCTTACAGGGACTGCTCGTTATGCTAGCATCAATACTCATCTTGGAATAGAGCAAAGTAGGAGAGATGATCTAGAGTCCTTGGGATACATGCTTATGTATTTCTTGAGGGGAAGCCTTCCATGGCAGGGATTGAAAGCTGGGACCAAAAAGCAGAAGTATGAGAAAATAAGTGAGAAAAAAATGTCAACTCCAATTGAGGTGCTGTGCAAATCTTATCCGAAGGAGTTTGCATCATTTTTCCATTATTGTCGGTCTTTGCGATTCGATGACAAGCCAGATTATGCTTACCTGAAGGTTTTATTTCGTGAACTTTTCATTCGTGAGGGTTTTCAGTTTGATTTTGTATATGATTGGACTATATTGAAGTACCAGCAGTCCCAGATTGCTACTGCTGACCCTCGTTCCCATCCTGCTCTTGTAGCTGGAAAGTTTGGCACAGGGGCTGGTGCTTCAGAGAGAATTTCAGCGGGGCAGGATGGCCGTGAGCGAAAGTCTGGAACAGGTGAAGGATCTCATCGAAGATCTAATGGGGGTAATGGTAATCTTCACAATATTGGTTCAGCAGATCAATATAGAAACAAGAATTTAGGGCTGGATGGCCCTTCAACATCAAAAGAAGTCCCAGACAGTGACCGTGGGCGTTCCTCCTTTACACGAGCTGGGAGTTCATCCAGGAGGGCAGTTGCTTCAAGCAGGCCGACTACAGCTGCTGATAATAGTGAGCGCTCCCGTTCCCTAACAAGTAGATTTGTTCCCAGGAGTCTTCGCTCTTCAAGTGCACAGCGCAGTTCAACACCAGCTACATCTGAGCCGAGAAGGATATTTGGTATTCGAAATGCATCAATGAAGGGCACGCCTGAGGATTCACTGAGGAGTTTTCAGTACTTGTCTGTAGATTCAGGACAGAAGCAGTGA___TAAGTAATTTGTCCAATTTTATGATTTTCGGGGAATTGAAAAGGTCTGTTCTAGCTTGGTATATCTAATTGGCCAATTCCGCTGTCATTTGTTCTTGCTGTTTGAGATTAAGTCCTTACAAGAGGAATATATTTAAAATTAATCATAGGCTGGCCTTGATGGGGAAAGCAAATTCATACGTTTCGTGCATCTACATCGAGGATGAGCAGTTAAAAGACAAAGGAAAGCAGCCGAAGAGAGTGCATGCTTGACCAAACATTGTCTCAATGGGCCCTATTTTAAATTGTTGCTTGCCATTCATCATTTCTTGGGCATGTAATTCGTAGTCAACTCAGACAGCATACAACAAAACCCCAAGCTTCTATCCTGATTAGCTGTTTGGTTTCTCTATTTTACATAAATACGTATCGAGCTCTCATTTATCTCAATTTGGGTCTATCGAATTTAAAATAGAAGTTATTGTATGGTTAAATATGGTTGAAATCACTGCCTGTCCATGCAGAATCGAAAAAATGTTCTGTGTACCTTCCAAGGCAACTGCCAATTTGTTGAGTTTAATGTATTTGTACCTGTCTTGCTCAGAATGCTTGCATATGTCCATCTCTGACTTGGCCTTCCAAATCAGATTACTGTGAGATAAAGTTTGAAAGTAAGAAGAGACAGAATGGAATAGTGGCTTGTTGTAAAGGGAAATATCTATTTCTTTTCATTTTTCACCCAT

Fln Alignment:

Contig27182___MEPLVGDKYRLGRKIGSGSFGEIYLGVNIQTNExVAIKLENAKTKHPQLLYESKLYKILQGGTGVPNIRWSGVEGDYNVMVIDILGPSLEDLFNYCNRKFSLKTVLMLADQLINRIEYVHSKSFLHRDIKPDNFLMGLGRRANQCYIIDFGLAKKYRDPATHKHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYMLMYFLRGSLPWQGLKAGTXXXXXXXXXXXXMSTPIEVLCKSYPKEFASFFHYCRSLRFDDKPDYAYLKVLFRELFIREGFQFDFVYDWTILKYQQSQIATADPRSHPALVAGKFGTGAGASERISAGQDGRE
A9NUC1_______________MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNExVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVLDWTILKYQQTQMANTPPPSIGAAV-GSSSRAPPVADKSSGGQDGRD

SNPs (tot: 3)

Position	C %	G %	T %	Probability
2090	80		20	0.995493
2100		75	25	0.996473
2142	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain