SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27114

Length: 2683 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene27114
CGATCAGTGGAAGCGAGGAGGGTTTGTAGTGTTCAGAGGAAGCGAGAGTGGGTTTTGACGAGAAGTGGATGGCAAGCTCAGTACAGGCAGCGGCGGTGAATTTTCCCCCAGGATTCAGATTTCGGCCCTCCGATGAAGAAATCGTGGGGTTTTATTTGAAGAACAAAGTTCACGGCAATAAATTCGAGTTCGATGTTATTCGCGAGATCGATCTTTACAAGTGTGAGCCCTGGGATCTGCCTGAGAAGTCATTCTTGCCAAGTAGAGATTTAGAGTGGTATTTCTTCTGTCCTCGTGATCGTAAATATCCCAACGGCTCACGTTCAAATAGGGCAACTGAAGCAGGTTACTGGAAAGCTACTGGAAAAGATCGTAAAGTGAGCTGTCGCTCTAATAATCATAAAATTGGTACTAAGAAGACTTTAGTCTTCTACAAAGGCCGTGCTCCGAATGGAGAACGAACAGATTGGCTGATGCATGAATATCGCCTGGAGGGAACGCAATGCAAAGGAGGAACTAATTTGCAGGATCTTTATGTGTTATCTCGGGTATTCAAAAAGCCCAAACAAGGTTCAAATGATCAAGAGACATTTGAAGCTTTTCCCATGTTAAACAACACCTCTTCTCCTACTGATGGCTCAGATGGTGACATTGAAGGTCAGTCAGAAGATAGGTCCTCACCGGGAAAGCCGGAAGATGACGCTCCGGCAAGTTCACGGTCAGAAACATCATCAGAGATTTTAGACAATAAGACCGAAGACATTAATTGTATTGATGGACCACCAATGGAGTCTCCCCAGGACATATCCAATCCAAATTGGAATTCAGTATCACTCCGTCATACCTCTACCAACGAAAATGATGATTCTCAGTGGAGGAACCAAAAAGTGCAAAATGATCCATTCTATCCATCATACGAGGAAGATTGTTTCCCACATGTTCTTGAAAATCCATATCGGGTTAATAATGACTATTCGCTTGGGACTCCAATGAATTCCTCTCTCATGGAATCAGAAGCATTTGAAAGATGTTTAGATTTTGGATCCTTTTCCGATCAGGATGGTATTGACCTTGCATCCATGCTAAACAGCTTTGAATGTGACGATCTTTATTCAGTGCTACCCATTATCGAGGAAGAAAAGAACGACGAACCTTGTGTGGCAGGGTTTCTTACTAGTATGCCAGACAATGGTGTTCAAATCCAATTTCGCTCTCGACCTCAGTTGCCGCATAGCAATCAACAGCCATTGCCTAGTCAAGGCACTGCTATGAGAAGACTTCGCCTGCAGATATACAAAACTGAAGAATCTGCAAATGGAAGAAAAGAGCATCCGTTCACTGTAAATGGCCGGTCAGCCTCTTCTGACTGTAACAGTGATGATAGCGATGAGTCTGAGGTTATCACACAGCCCGAGGACTCTCCACTAGCATCTTTCCCCAGTCAAATAAGCTGTTGTAGTGTAGAAGATGATGCAGAGTCTGATACAATCCACGATTCTATTGAGAGTTCTGAAATAGTAGCGAATGGTCATGACTTTAATCTGGAACCGACCCAATTTTTACCCTCTAGTTTCTTTCCTGTTGAGGAGGCTTCAGAGAAAAGTGACACGTCTGTTAGCAGCAAAGAATCAGGAGATAAATCTGTTCTTATTGAGAGAACAGAATCGGTGATGTCATCAGCTTGTAGTCAGTCTTCATCCACAGAAATTCAAATAGAGACAACTGTATCGCATACTACAGGTTCTCAAGAAATTGACTCGGTCAGTGTGAAATCTTCTGCTTTAGGAATGGAATCTCCCACTGTTCTGGCTTCTAAGAAGGCCTTGGTCTCAGAGGGTGCATCTAGTTTTGGTTCCAGACAACTGGGAGCTATCAGTTCTAATCATAATGGTGTGGCCGAGACCCAAGGGTTAGGTAAGTTCACAGGCTTCAATGTGATTTTGACTGGCTTGAATCGGAGAGGGAAGTTTAGAGAAAAGTATGTAAGATCTGATCATGTAGAGGAGTCAAGAAATGTCAGAGAGAATGTTTCTGATCTCTGTTCTAAAGACTCTAGCAAAGGTTTTAGCAGTTTAAGGAAGGCATTGGGTATCTTCATTCGGCCTTTTCAGCTTCAAAGCAAGATGTCCAAAGGTGCTAATTGTATTCCATTAATATGCTTGCTCAGCACAGTGTTTTTAGTCTTGTGCATATGGAACACATACCTTTCTGCTCGAAGCTCATCTCCTATCATTTTATAAGAGAGATCTTGGTTTCTTGCATTATGTAACCAACACCTGCCATTGAATCTTTATATGTTAATAGGCTCTGTATATATAGCCAAAATCCTTTGGTATTCACTCTTCACAGAAGACCAGGAATGCCTTTTGGAATCAGGCTTCTTTTTGTCAAGTTGTTTGTCATATTATGATCTATGAAGTACCACACAATCACACTTTATTGATTGCAATTGATGTAGAGGATCTTCACACAATGCAAGAGGTTGAATCTGTCTGCTTGGGCTGGACAAGGATTGTAATTTACGATATTTTCTTGGTCTACTTTAGTTGGCATTATATTCAGCCCAGTTTGAGGGATTTTGCATAGACCAGTCCCAGTCCCCTCACGGGATGATTATAAACATGTAATTTTGACATTGTAAGCATACCTTGTTTTAATACTTGGGTACATCATTTGATAATAC

Ace file of the UniGene sp_v2.0_unigene27114

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain containing protein 28 [Arabidopsis thaliana] gb\|AAF06052.1\|AC009513_8 Contains similarity to gb\|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb\|AEE34440.1\| NAC domain containing protein 28 [Arabidopsis thaliana]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	nac domain ipr003441	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACD3

Fln msg: your sequence is longer than subject: 724 - 214

Fln protein: MASSVQAAAVNFPPGFRFRPSDEEIVGFYLKNKVHGNKFEFDVIREIDLYKCEPWDLPEKSFLPSRDLEWYFFCPRDRKYPNGSRSNRATEAGYWKATGKDRKVSCRSNNHKIGTKKTLVFYKGRAPNGERTDWLMHEYRLEGTQCKGGTNLQDLYVLSRVFKKPKQGSNDQETFEAFPMLNNTSSPTDGSDGDIEGQSEDRSSPGKPEDDAPASSRSETSSEILDNKTEDINCIDGPPMESPQDISNPNWNSVSLRHTSTNENDDSQWRNQKVQNDPFYPSYEEDCFPHVLENPYRVNNDYSLGTPMNSSLMESEAFERCLDFGSFSDQDGIDLASMLNSFECDDLYSVLPIIEEEKNDEPCVAGFLTSMPDNGVQIQFRSRPQLPHSNQQPLPSQGTAMRRLRLQIYKTEESANGRKEHPFTVNGRSASSDCNSDDSDESEVITQPEDSPLASFPSQISCCSVEDDAESDTIHDSIESSEIVANGHDFNLEPTQFLPSSFFPVEEASEKSDTSVSSKESGDKSVLIERTESVMSSACSQSSSTEIQIETTVSHTTGSQEIDSVSVKSSALGMESPTVLASKKALVSEGASSFGSRQLGAISSNHNGVAETQGLGKFTGFNVILTGLNRRGKFREKYVRSDHVEESRNVRENVSDLCSKDSSKGFSSLRKALGIFIRPFQLQSKMSKGANCIPLICLLSTVFLVLCIWNTYLSARSSSPIIL*

Protein Length: 725

Fln nts: CGATCAGTGGAAGCGAGGAGGGTTTGTAGTGTTCAGAGGAAGCGAGAGTGGGTTTTGACGAGAAGTGG_-_ATGGCAAGCTCAGTACAGGCAGCGGCGGTGAATTTTCCCCCAGGATTCAGATTTCGGCCCTCCGATGAAGAAATCGTGGGGTTTTATTTGAAGAACAAAGTTCACGGCAATAAATTCGAGTTCGATGTTATTCGCGAGATCGATCTTTACAAGTGTGAGCCCTGGGATCTGCCTGAGAAGTCATTCTTGCCAAGTAGAGATTTAGAGTGGTATTTCTTCTGTCCTCGTGATCGTAAATATCCCAACGGCTCACGTTCAAATAGGGCAACTGAAGCAGGTTACTGGAAAGCTACTGGAAAAGATCGTAAAGTGAGCTGTCGCTCTAATAATCATAAAATTGGTACTAAGAAGACTTTAGTCTTCTACAAAGGCCGTGCTCCGAATGGAGAACGAACAGATTGGCTGATGCATGAATATCGCCTGGAGGGAACGCAATGCAAAGGAGGAACTAATTTGCAGGATCTTTATGTGTTATCTCGGGTATTCAAAAAGCCCAAACAAGGTTCAAATGATCAAGAGACATTTGAAGCTTTTCCCATGTTAAACAACACCTCTTCTCCTACTGATGGCTCAGATGGTGACATTGAAGGTCAGTCAGAAGATAGGTCCTCACCGGGAAAGCCGGAAGATGACGCTCCGGCAAGTTCACGGTCAGAAACATCATCAGAGATTTTAGACAATAAGACCGAAGACATTAATTGTATTGATGGACCACCAATGGAGTCTCCCCAGGACATATCCAATCCAAATTGGAATTCAGTATCACTCCGTCATACCTCTACCAACGAAAATGATGATTCTCAGTGGAGGAACCAAAAAGTGCAAAATGATCCATTCTATCCATCATACGAGGAAGATTGTTTCCCACATGTTCTTGAAAATCCATATCGGGTTAATAATGACTATTCGCTTGGGACTCCAATGAATTCCTCTCTCATGGAATCAGAAGCATTTGAAAGATGTTTAGATTTTGGATCCTTTTCCGATCAGGATGGTATTGACCTTGCATCCATGCTAAACAGCTTTGAATGTGACGATCTTTATTCAGTGCTACCCATTATCGAGGAAGAAAAGAACGACGAACCTTGTGTGGCAGGGTTTCTTACTAGTATGCCAGACAATGGTGTTCAAATCCAATTTCGCTCTCGACCTCAGTTGCCGCATAGCAATCAACAGCCATTGCCTAGTCAAGGCACTGCTATGAGAAGACTTCGCCTGCAGATATACAAAACTGAAGAATCTGCAAATGGAAGAAAAGAGCATCCGTTCACTGTAAATGGCCGGTCAGCCTCTTCTGACTGTAACAGTGATGATAGCGATGAGTCTGAGGTTATCACACAGCCCGAGGACTCTCCACTAGCATCTTTCCCCAGTCAAATAAGCTGTTGTAGTGTAGAAGATGATGCAGAGTCTGATACAATCCACGATTCTATTGAGAGTTCTGAAATAGTAGCGAATGGTCATGACTTTAATCTGGAACCGACCCAATTTTTACCCTCTAGTTTCTTTCCTGTTGAGGAGGCTTCAGAGAAAAGTGACACGTCTGTTAGCAGCAAAGAATCAGGAGATAAATCTGTTCTTATTGAGAGAACAGAATCGGTGATGTCATCAGCTTGTAGTCAGTCTTCATCCACAGAAATTCAAATAGAGACAACTGTATCGCATACTACAGGTTCTCAAGAAATTGACTCGGTCAGTGTGAAATCTTCTGCTTTAGGAATGGAATCTCCCACTGTTCTGGCTTCTAAGAAGGCCTTGGTCTCAGAGGGTGCATCTAGTTTTGGTTCCAGACAACTGGGAGCTATCAGTTCTAATCATAATGGTGTGGCCGAGACCCAAGGGTTAGGTAAGTTCACAGGCTTCAATGTGATTTTGACTGGCTTGAATCGGAGAGGGAAGTTTAGAGAAAAGTATGTAAGATCTGATCATGTAGAGGAGTCAAGAAATGTCAGAGAGAATGTTTCTGATCTCTGTTCTAAAGACTCTAGCAAAGGTTTTAGCAGTTTAAGGAAGGCATTGGGTATCTTCATTCGGCCTTTTCAGCTTCAAAGCAAGATGTCCAAAGGTGCTAATTGTATTCCATTAATATGCTTGCTCAGCACAGTGTTTTTAGTCTTGTGCATATGGAACACATACCTTTCTGCTCGAAGCTCATCTCCTATCATTTTATAA___GAGAGATCTTGGTTTCTTGCATTATGTAACCAACACCTGCCATTGAATCTTTATATGTTAATAGGCTCTGTATATATAGCCAAAATCCTTTGGTATTCACTCTTCACAGAAGACCAGGAATGCCTTTTGGAATCAGGCTTCTTTTTGTCAAGTTGTTTGTCATATTATGATCTATGAAGTACCACACAATCACACTTTATTGATTGCAATTGATGTAGAGGATCTTCACACAATGCAAGAGGTTGAATCTGTCTGCTTGGGCTGGACAAGGATTGTAATTTACGATATTTTCTTGGTCTACTTTAGTTGGCATTATATTCAGCCCAGTTTGAGGGATTTTGCATAGACCAGTCCCAGTCCCCTCACGGGATGATTATAAACATGTAATTTTGACATTGTAAGCATACCTTGTTTTAATACTTGGGTACATCATTTGATAATAC

Fln Alignment:

Contig27114___SVSSKESGDKSVLIERTEXXXXXXXXXXXXTEIQIETTVSHTTGSQEIDSVSVKSSALGMESPTVLASKKALVSEGASSFGSRQLGAISSNHNGVAET----QGLGKFTGFNVILTGLNRRGKFREKYVRSDHVEESRNVRENVSDLCSKDSSKGFSSLRKALGIFIRPFQLQSKMSKGANCIPLICLLSTVFLVLCIWNTYLSARSSSPIIL
D5ACD3_______________SVNIKESRDKSVLIERSESAMSSACSQSSSSEVQTETTVSHTTSSQETDMVSVKSSSLGMESPTVLASKKVLISEVASSFVSRQLGAISSNHNAVSESHMSYKGRVKFTGFNVILSFLKRRGKSREKYVTSDWVEESRNVTENFPDLCSKDSWKGFSNLKKALGIFIQPYQLQSKISKGANCISLICLLSTVFLVLCIWNTCHFARSSSSIIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain