SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27076

Length: 1655 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27076

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SU81_VITVI	-	-	48%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 26; Oryza sativa subsp. japonica (Rice).	-	-	50%
Blast2go	ubiquitin carboxyl-terminal hydrolase 26-like	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	seed development	GO:0048316	Biological Process	0.0	68%
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	IPR006615	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: A3AF13

Fln msg: your sequence is shorter than subject: 455 - 1079

Fln protein: KDAVEAVLAGRYLEGSQYYVSRTWLMRWLRRKIVDAPCDGDAGPTASLKCPHGGLLPEQATGAKRQLLPENIWNYFHENALQIEPNNPVGYTPFPSDSETCEACEMELTQAANLQDHLRATKMEQRQRHELLSSGKSIAVVPEVRYYLVPSFWIAKWKAYLTVSGRNASTTEEPQNLEHCMESILCRKHFRLLYRPPDLVRKRGEFVQKTTNVDVLTIITQMDWELFCEEWNVPKNKGISAVIELKSAEISDISGNCKEVPITDEDLNGDDSECKIHRIPTLRTQPEICEECIEERESSELMRKLEYSNEEIRVYLVRGKEPPRSILAASGTVSDAERRTSKRSRKASTSGSLINLKVSGCTSIYQLKMMIWESFGVVKENQKLHKGTTELTEESATLADLNVFPGDSLWVTDTEMFENRDIAEELSEQEMDNGQTEEGFKGTLLMSTIPAKVF*

Protein Length: 456

Fln nts: GAAAGATGCAGTGGAAGCTGTGCTTGCAGGACGTTATTTAGAAGGGAGTCAGTATTATGTTTCTAGAACATGGTTGATGCGATGGTTGCGGCGAAAAATTGTGGATGCACCTTGTGATGGTGATGCTGGTCCAACAGCTTCTCTTAAATGTCCTCATGGAGGCCTTCTGCCAGAACAGGCAACTGGTGCCAAGCGGCAGTTGTTGCCTGAGAATATCTGGAATTATTTTCATGAAAATGCATTGCAAATTGAACCTAATAATCCTGTAGGCTATACCCCCTTTCCATCGGATTCAGAGACTTGTGAAGCTTGTGAGATGGAATTAACACAGGCAGCCAATTTACAAGACCATCTGAGGGCAACCAAGATGGAACAACGGCAAAGACATGAACTGTTATCTTCCGGTAAAAGCATTGCTGTGGTACCCGAAGTTAGATATTATTTGGTGCCTTCATTCTGGATTGCAAAATGGAAAGCTTACTTGACAGTAAGTGGCAGGAATGCTTCTACAACAGAAGAGCCACAAAATTTGGAGCATTGTATGGAATCTATTTTGTGCAGAAAGCATTTTCGATTGCTTTATAGGCCTCCTGATCTTGTCAGAAAGCGAGGTGAATTTGTGCAGAAGACTACAAATGTCGACGTTTTGACAATTATTACACAGATGGACTGGGAGCTTTTCTGCGAAGAATGGAATGTGCCTAAAAATAAAGGCATTAGTGCTGTGATTGAATTGAAATCTGCTGAAATCAGTGATATTTCTGGAAACTGCAAGGAGGTGCCAATCACTGATGAGGACTTAAATGGTGATGATTCAGAGTGTAAGATCCACAGAATCCCTACCCTGAGAACGCAGCCAGAGATTTGTGAAGAATGTATAGAGGAAAGAGAAAGCTCTGAATTGATGCGTAAATTGGAATATAGTAATGAGGAAATTCGCGTTTATCTTGTCCGAGGGAAAGAGCCTCCTAGGTCTATTCTGGCTGCGTCTGGCACGGTGTCTGATGCTGAGCGACGTACTTCAAAACGCTCTCGAAAGGCATCAACAAGTGGTAGCTTAATTAACTTGAAGGTTTCTGGATGCACATCTATCTATCAGTTGAAGATGATGATTTGGGAGTCCTTTGGAGTGGTGAAGGAGAATCAGAAGCTTCACAAAGGCACAACGGAACTAACGGAAGAATCAGCTACTTTAGCTGACTTGAATGTGTTCCCTGGTGATAGTTTATGGGTCACAGACACTGAAATGTTTGAAAATCGAGACATCGCTGAGGAACTATCGGAGCAAGAAATGGACAATGGGCAAACAGAAGAAGGATTCAAAGGCACACTTCTGATGTCAACCATACCTGCTAAGGTGTTTTAA___GAGCTTTAACTATTTGTTGCTATTATAAAGATTAAGGTTGTCACCTGGATTTGTTGACATATAATTTTTGGGGCAATCGGTTTCTACTGTTGTTACCTTGAAAGAGATGGATATGGTGCAGTCTAGCGGACTAGCACATTTTGCTTCTTATACAGCTGAAAAATTCGTGCTAGTATCTTTTCTCTTTATAATGCATTGAGGAAATTGATGCAATTGATTCTATAAGCCAGGGCTGTTCAGGATATAGCAGCATCGGGAACCTGTCACTGGTGTAATGGTGGTGATGAGT

Fln Alignment:

Contig27076___KDAVEAVLAGRYLEGSQYYVSRTWLMRWLRRKIVDAPCDGDAGPTASLKCPHGGLLPEQATGAKRQLLPENIWNYFHENA-LQIEPNNPVGYTPFPSDSETCEACEMELTQAANLQDHLRATKMEQRQRHELLSSGKSIAVVPEVRYYLVPSFWIAKWKAYLTVSGRNASTTEEPQNLEHCMESILCRKHFRLLYRPPDLVRKRGEFVQKTTNVDVLTIITQMDWELFCEEWNVPKNKGISAVIELKSAEISDISGNCKEVPITDEDLN---GDDSECKIHRIPTLRTQPXXXXXXXXXXXXXXLMRKLEYSNEEIRVYLVRGKEPPRSILAASGTVSDAEXXXXXXXXXXXXXGSLINLKVSGCTSIYQLKMMIWESFGVVKENQKLHKGXXXXXXXXXXXXDLNVFPGDSLWVTDTEMFENRDIAEELSEQEMDNGQTEEGFKGTLLMSTIPAKV
A3AF13_______________RSIAEAALAGNNPDGPLYFVSRPWLTQWLRRKNVDIPSDADSGPTIALTCTHGNLLPEHASGAKRVTVPEDLWLFLYETSGMKIDD-----IVTFPSDSQPCGICSQQLSVVASVEDNLRAVKLKQRQSHEKLTSGKSLALHPGQKYYLVPSSWLSEWRAYITATGKNISSLPEPQSLEVTINSLICEKHSRLLQRPLDLVCKRGTITQKASNTDGLTMISESDWILFSEEWNVAHGKGLCAEIVFSKSSQDNLQSS-EAVPILVEDLDQSTNDLSNDLGGREPYVRTDPEVCEECIGEKESCALVEKLNYQNEDIQVYLVRGKEAPKSIREASAAV-PVPDRRTSKRSRRTTSGNSISLKVSGSTTVYQLKLMIWESLGIVKENQELHKGSVEIEDDFATLADKCIFPGDVLWVKDSEIYENRDIADEISEQKV-VVQTEEGFRGTLLTSSASAQL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1357		10		90	0.90298
1358	90		10		0.90298
1359	90			10	0.90298
1360		11	88		0.923564
1364		11		66	0.999999
1365		11		88	0.923564
1368	88		11		0.923564
1369	88		11		0.923564
1370		11	88		0.923564
1371	88			11	0.923564
1374	11			88	0.923564
1375		11		88	0.923564
1377	88	11			0.923564
1583	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain