SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27073

Length: 846 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27073

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb\|AAL47445.1\| At2g42750/F7D19.25 [Arabidopsis thaliana] gb\|AAD21732.2\| expressed protein [Arabidopsis thaliana] gb\|AAM19907.1\| At2g42750/F7D19.25 [Arabidopsis thaliana] gb\|AAM627	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	3Fe-4S ferredoxin	IPR001080	-	-
Sma3	4Fe-4S binding domain	IPR001450	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3		IPR015609	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	C %	G %	T %	Probability
394		66	33	1.0
406	25	75		1.0
407		25	75	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain