SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene27024

Length: 1566 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene27024

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter B family member 15 n=3 Tax=Arabidopsis RepID=AB15B_ARATH	-	-	56%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	43%
Blast2go	abc transporter b family member	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Separated hits, possible frame ERROR between 1183 and 1185, Unexpected STOP codon at 3' end. Distance to subject end: 619 aas, your sequence is shorter than subject: 455 - 1316

Fln protein: VRSLVGDRVSLLVECVSGVTITVTLGMLVAWRLAIVLIAVQPLMVLCFYTRNVLLKSVSGKSIKAQNQGSQAAFECVTHHRTIAAFCSQDKIINIFDSTQTGPRREINKQSWYAGLALGTSKFLEICYWPFEFWYGGKLIAQGVISFHAFLLNHFIFGRLGRMIADAGSMTSDLAKGSDAVTSVFEILDRNSLINPENHGAVNPEKVQGYVALNSVDFAYPARPNAMILRNFSLKINAGSSVALVGKSGCGKSTIIGLIERFYDPLKGTVLVDGKDIRSFNLRSLREHIALVGQEPTLFAGSIRENIAYGKENASEAEIIDAAKAANAHEFISCLKDGYETSTGNRGTQLSGGQKQRIAIARAIIKNPSILLLDEATSALDAYSEKVVQEALDxxLTVGRTTVTVAHRLASVQNADCIAVIEKGSVVEQGNHLHLMEKGEGGAYFGLIKLQQRQ*

Protein Length: 456

Fln nts: GGTAAGATCCTTGGTGGGAGATCGTGTTTCACTCCTAGTGGAGTGTGTCTCTGGAGTAACTATAACGGTGACTCTAGGAATGTTGGTAGCTTGGAGACTTGCTATTGTCTTGATCGCTGTGCAGCCGTTGATGGTGCTTTGTTTCTACACCAGAAACGTCCTCCTTAAAAGTGTTTCGGGCAAGTCTATTAAAGCGCAGAATCAAGGTAGCCAAGCGGCCTTCGAATGTGTCACACATCATAGAACCATAGCGGCTTTTTGCTCTCAAGACAAAATTATTAATATTTTTGACTCCACACAGACAGGGCCACGCAGGGAGATCAATAAACAGTCTTGGTACGCAGGATTGGCCCTGGGAACTTCTAAGTTTCTTGAAATATGCTATTGGCCATTTGAGTTTTGGTACGGAGGGAAGCTCATAGCACAAGGTGTTATCAGTTTTCATGCTTTTTTATTGAACCATTTTATATTTGGAAGATTGGGTCGCATGATAGCGGATGCTGGAAGTATGACTTCCGACCTGGCCAAAGGGTCTGATGCTGTCACGTCCGTGTTTGAAATTTTGGACAGAAATAGCCTTATAAACCCAGAGAACCATGGTGCGGTTAACCCTGAGAAAGTCCAAGGCTATGTAGCGCTCAATAGTGTGGACTTTGCTTATCCAGCTCGTCCAAATGCTATGATCTTGAGAAACTTCAGCCTCAAAATCAACGCAGGGAGCAGCGTGGCGCTAGTTGGAAAGAGTGGGTGTGGTAAGTCCACTATCATCGGATTGATAGAGAGATTCTATGATCCGCTGAAAGGGACAGTACTCGTTGATGGGAAAGATATAAGGAGCTTCAATTTGCGGTCATTGAGAGAGCATATAGCTCTTGTAGGGCAGGAGCCAACTCTTTTTGCTGGGAGCATCCGGGAGAACATTGCCTATGGTAAAGAGAACGCAAGTGAGGCGGAAATAATAGATGCTGCCAAGGCTGCCAATGCCCATGAATTCATTTCGTGCTTGAAGGATGGATACGAAACGAGCACAGGGAACCGGGGAACGCAGCTGTCTGGGGGCCAGAAGCAAAGGATAGCGATAGCAAGGGCAATTATTAAGAATCCAAGCATCTTGTTGTTGGACGAGGCAACCAGTGCACTGGATGCTTATTCGGAGAAGGTAGTTCAGGAGGCATTGGATCGxxxGCTGACGGTGGGACGAACGACTGTCACGGTAGCTCATCGACTGGCGTCAGTCCAAAATGCGGACTGTATAGCAGTTATTGAAAAGGGGAGCGTTGTTGAGCAGGGAAATCACTTGCATCTCATGGAGAAAGGCGAAGGCGGTGCATATTTTGGTCTTATCAAACTGCAGCAACGTCAGTAGGCAATTTATATTTGTATGCAAAAGGATCGCCATGGGTCACAATTGTATCCATAGTTCCGAAGACCCGAAGTTTTCAGGCGTCATAACTGTCACATTGACAACCATGGCGTTCTCTGTACCAAGAATTATTAATTGTCACATTGACAACCATGGCGTTCTCTGTACCAAGAATTATTAACGTAATAACGGAATAAATAAATTC

Fln Alignment:

Contig27024___VRSLVGDRVSLLVECVSGVTITVTLGMLVAWRLAIVLIAVQPLMVLCFYTRNVLLKSVSGKSIKAQNQGSQAAFECVTHHRTIAAFCSQDKIINIFDSTQTGPRREINKQSWYAGLALGTSKFLEICYWPFEFWYGGKLIAQGVISFHAFLLNHFIFGRLGRMIADAGSMTSDLAKGSDAVTSVFEILDRNSLINPENHGAVNPEKVQGYVALNSVDFAYPARPNAMILRNFSLKINAGSSVALVGKSGCGKSTIIGLIERFYDPLKGTVLVDGKDIRSFNLRSLREHIALVGQEPTLFAGSIRENIAYGKEN-XXXXXXXXXXXXXXXHEFISCLKDGYETSTGNRGTQLSGGQKQXXXXXXXXXKNPSILLLDEATSALDAYSEKVVQEALDRxLTVGRTTVTVAHRLASVQNADCIAVIEKGSVVEQGNHLHLMEKGEGGAYFGLIKLQQ
E6Y0T0_______________VRSLVGDALSLVVQNIATIIAGIVISFTANWLLALLILAIVPLLGLQGYMQVKFMTGFTADAKLVYEEASQVANDAVGSIRTVASFCAEDKVISLYNEKCSAPLKSGVKQGIIAGLGLGFSNFVMFTQYALSFWVGARLVEDGKTTFDKVFKVFFALSMAAAGISQSAGLSPDLAKAKSSINSVFKILDRPSKIDANDESGTILDNVKGDIEFQHVSFKYPTRPDVQIFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGAVTDEQIIAAAEAANAHKFISSLPQGYNINVGERGVQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQDALDRxIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLI-TNPSGAYSQLIHLQE

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
307		75	25		0.996473
315	75		25		0.996473
411		85	14		0.993533
553		88	11		0.923564
572	11		88		0.923564
596		11		88	0.923564
597	11		88		0.923564
600	88		11		0.923564
603		10	90		0.90298
624	10		90		0.90298
630	10	90			0.90298
823		18	81		0.999994
847	20		80		0.999996
854		20		80	0.999996
1139		50		50	1.0
1170	33		66		0.997452
1174	71		28		1.0
1176		28		71	1.0
1181		28		71	1.0
1184			71	28	1.0
1185	71		28		1.0
1187		71		14	0.984337
1190	71			28	1.0
1192	28		71		1.0
1193		28	71		1.0
1196	28		57		1.0
1199	14			85	0.993533
1214			14	85	0.993533
1238		14		85	0.993533
1241	85		14		0.993533
1246		85		14	0.993533
1247			14	85	0.993533
1258		14		85	0.993533
1268	85		14		0.993533
1344	10		90		0.90298
1349	90		10		0.90298
1358	10		90		0.90298
1368			90	10	0.90298
1385		12	75	12	0.975346
1392	12		87		0.992554
1410		25		75	1.0
1473	12		87		0.992554
1500		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain