SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26989

Length: 1222 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26989

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL	-	-	92%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	92%
Blast2go	leucine-rich repeat receptor-like protein kinase	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: your sequence is shorter than subject: 232 - 998

Fln protein: LVYEYMHNGSLGDLLHGSKASVLDWPIRYKIALEAAQGLAYLHHDCEPPIVHRDVKSNNILLDDDYGARVADFGVAKILQSCGKGVDSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIETKNGLNEVLDPKLVDCFKEEMTMVMKVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATAKDGKLSPYYYEEPTIGIV*

Protein Length: 233

Fln nts: TTGGTCTACGAGTACATGCATAATGGGAGTCTGGGTGATCTACTTCATGGATCTAAAGCTAGTGTTCTTGACTGGCCCATAAGATACAAGATTGCCCTTGAAGCAGCTCAGGGGCTCGCATATCTTCATCATGATTGTGAGCCACCGATTGTTCACAGAGACGTGAAATCCAATAATATCTTGCTGGATGATGATTATGGGGCTCGTGTTGCAGATTTCGGCGTTGCCAAAATTCTGCAGAGCTGTGGCAAAGGGGTTGATTCTATGTCTGCAATTGCCGGTTCCTATGGCTACATAGCTCCAGAGTATGCCTACACTCTCAAGGTGAATGAAAAAAGTGACATCTATAGTTTTGGAGTTGTGATCTTGGAGCTGGTAACTGGCAGGCGGCCAGTAGATCCAGAGTTTGGAGAGAACAAAGACCTTGTGAAGTGGCTGTGCAATAAGATAGAGACAAAGAATGGATTGAATGAAGTGTTGGATCCCAAGCTTGTGGATTGCTTCAAGGAGGAAATGACTATGGTTATGAAAGTAGGGCTTCTCTGCACAAGTGTCCTGCCCATTAACAGGCCATCAATGAGGAGGGTGGTAGAGATGCTGCAGGAAGCCAACCCCCATCACAAGGCCAAGGCAACTGCCAAGGATGGAAAATTGTCTCCTTACTATTACGAGGAACCCACCATTGGCATTGTATAG___GCATGATGGTAATTGCATCTGGCCTGGACTTTTCTTCTTTGGCCTCTGTATTTACTGCTACTTTGTAGCTTCTGCGCTTGCTTAGCTCTTGTTCATGTGCAACTTTAAAATCTTACTCTGATACTGTTACCCAAAAGAAGCTTGCCCCTGTAACTTTTAGGGTATATTTACAATGAGAATAGAATGGGTAGAGGCTCATGAATGAAGAGGAACATGTGTCTACCCACTTGTGGGCCTTTGTATCTTTGTTTTTAATAGATCTGCCTTTTGAGTCAATGAGTTCTGATGGTCTGGCTAGGGCTCAGAATTACTCCCTGCCAAACACCATGTGGGGAGCACTACCGCCATCATCATGCATCTACTTTCTTTTGAAACGCTCCTTCTCTCCCCTCGTACCCTCCTTGGGCAGAGACATTTAATTTCAACCAGAACGCTGAAGCTTTTAATGGAATACAAGCGGGAATTAGGATGACTTTATTGGGTTGCCTGATATTaTCATTGCCATGTAGGCATAAATTTTATTTTG

Fln Alignment:

Contig26989___LVYEYMHNGSLGDLLHGSKASVLDWPIRYKIALEAAQGLAYLHHDCEPPIVHRDVKSNNILLDDDYGARVADFGVAKILQSCGKGVDSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIETKNGLNEVLDPKLVDCFKEEMTMVMKVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATAKDGKLSPYYYEEPTIGIV
Q19AV8_______________LVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATGKDGKLSPYYCEEPTICIV

SNPs (tot: 8)

Position	C %	T %	Probability
1035	75	25	0.996473
1055	75	25	0.996473
1073	75	25	0.996473
1079	75	25	0.996473
1081	75	25	0.996473
1086	75	25	0.996473
1088	75	25	0.996473
1118	20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain