SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26958

Length: 971 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26958

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Actinidia arguta RepID=C1PGH4_9ERIC	-	-	68%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	lipoxygenase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	77%
Blast2go	alpha-Linolenic acid metabolism	00592	77%
Blast2go	Biosynthesis of plant hormones	01070	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	lateral root primordium development	GO:0010386	Biological Process	77%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: Separated hits, possible frame ERROR between 429 and 431, your sequence is shorter than subject: 307 - 930

Fln protein: ALARQILINGGGILETTVFPGKYSMEMSAVAYKDWRFDEQGLPADLLKRGMAVVDSSMPHGLKLMIEDYPYAVDGLEIWFAIDSWVKEYLSLYYQSDDAVKSDTELQAWWNEIRNVGHGDKKDETWWYSMETVEELEKAMTTxxIWVASALHAALDYGQYSYGGYMPDRPTISRRLIPEEGSQEFSELVENPDLAILRTLSNKFQTTLGIALIEILSRHSTDEVYLGQRATSEWSDDKRVTEAFERFGTKLKEIEKNITERNLNAEILKNRSGPAKVPYTLLYPNTSDLTHKGGLTGMGIPNSTAI*

Protein Length: 308

Fln nts: GCTCTGGCTCGCCAAATTCTTATAAATGGTGGAGGCATTCTTGAAACAACAGTATTTCCTGGAAAGTATAGCATGGAGATGTCTGCAGTAGCGTACAAGGACTGGAGGTTTGACGAACAAGGCTTGCCTGCAGATCTGCTCAAAAGGGGTATGGCAGTGGTGGACTCATCAATGCCCCACGGGCTTAAGCTGATGATCGAAGACTACCCTTATGCCGTGGATGGATTGGAGATATGGTTCGCAATAGATTCATGGGTTAAGGAGTACCTGTCCTTGTACTACCAGAGTGACGATGCAGTGAAATCTGATACAGAGCTTCAAGCATGGTGGAACGAAATCAGAAATGTTGGTCACGGAGACAAGAAGGACGAGACATGGTGGTACAGCATGGAGACCGTGGAAGAACTTGAAAAGGCGATGACAACAATxxxAaTATGGGTGGCCTCGGCTCTTCACGCTGCGcTTGATTACGGGCAATACTCTTACGGCGGATACATGCCTGATCGtCCCACCATCAGCAGAAGGTTAATTCCGGAAGAAGGGTCCCAAGAGTTCTCAGAGCTGGTGGAGAATCCGGACTTGGCTATCCTTAGAACTCTAAGTAACAAATTTCAAACCACCCTTGGTATAGCCCTCATAGAAATCCTGTCGAGGCATTCAACAGACGAGGTTTATTTGGGGCAGAGAGCCACGAGTGAATGGAGTGATGATAAACGTGTGACAGAGGCTTTTGAACGTTTCGGAACAAAGTTGAAGGAGATAGAGAAGAATATAACAGAAAGAAACCTGAATGCAGAAATATTGAAGAACAGGTCTGGTCCGGCCAAGGTTCCCTATACTTTGCTTTATCCAAACACCTCGGATCTGACTCACAAAGGAGGACTTACTGGCATGGGAATTCCCAACAGCACTGCTATCTAATTTACTCTATGCGCCGTTAAAATATCATATAATTAAAAAAATGACCCATATA

Fln Alignment:

Contig26958___ARQILINGGGILETTVFPGKYSMEMSAVAYKDWRFDEQGLPADLLKRGMAVVDSSMPHGLKLMIEDYPYAVDGLEIWFAIDSWVKEYLSLYYQSDDAVKSDTELQAWWNEIRNVGHGDKKDE-TWWYSMETVEELEKAMTTIxIWVASALHAALDYGQYSYGGYMPDRPTISRRLIPEEGSQEFSELVENPDLAILRTLSNKFQTTLGIALIEILSRHSTDEVYLGQ--RATSEWSDDKRVTEAFERFGTKLKEIEKNITERNLNAEILKNRSGPAKVPYTLLYPNTSDLTHKGGLTGMGIPNSTAI
B8LLK5_______________ARQSLINADGVIELGFTPGKYSTEMSSKIYKEWKFNEQGLPADLLKRGMAVRNPTSPYGLKLVIEDYPYAVDGLEIWLSLKEWVSDYLSLYYKDDASIKRDQELQAWWNEIVNVGHGDLKDDPSRWYKMETKEEVVEAVTTIxIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVDDSGVEEAFNRFSSRLVQLEKNVIDRNNNPN-LKNRHGPAQVPYTLLYPNTSDLSESGGLIVQGVPNSISI

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
365	66		33		0.997452
369		66		33	0.997452
395		33	66		0.997452
406		33	66		0.997452
417	33	33	33		0.997753
418	66			33	0.997452
420	33		33	33	0.997753
426	75	25			0.996473
430	25	75			0.996473
431	50			25	0.995533
433	75			25	0.996473
437			75	25	0.996473
439	25		75		0.996473
447		75		25	0.996473
461		66	33		0.997452
464	33		66		0.997452
479		33		66	0.997452
486		33	66		0.997452
505		66	33		0.997452
527	50		50		1.0
529	50			50	1.0
532			50	50	1.0
547	50		50		1.0
564	50			50	1.0
574	40		60		1.0
605	66	33			1.0
606	66	33			1.0
618		80	20		0.995493
632	20	80			0.995493
661	83		16		0.994512
692	85	14			0.999981
693	14		85		0.999981
698		14		85	0.999981
699		14	85		0.999981
700			85	14	0.999981
701	85			14	0.999981
705	85	14			0.999981
710	71		14		0.999974
711	85	14			0.999981
716		14	85		0.999981
717	14			85	0.999981
720		85		14	0.999981
872	87		12		0.992554
952			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain