SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26925

Length: 1061 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26925

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NK21_PICSI	-	-	85%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cyclophilin	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	86%
Blast2go	protein peptidyl-prolyl isomerization	GO:0000413	Biological Process	86%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	86%
Blast2go	membrane fraction	GO:0005624	Cellular Component	86%
Blast2go	multivesicular body	GO:0005771	Cellular Component	86%
Blast2go	Golgi stack	GO:0005795	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	cytosol	GO:0005829	Cellular Component	86%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK21

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MARQSTILLFWSLVFLGAIVFTQAKHEDLEEVTHKVYFDVDIAGKPAGRVVIGLFGKAVPKTVENFRALCTGEKGVGKSGKPLHYKGSFFHRIIPSFMIQGGDFTLGDGRGGESIYGTKFADENFKLKHTGPGFLSMANAGxxITTVTTDWLDGRHVVFGKIISGMDVVYKVEAEGRQSGQPKRKVKIADSGELSMD*

Protein Length: 199

Fln nts: CTGGCTTCTGGTGACACAAATGTCACAGGTGAATTGATTGAATAATAGAAAGTAGCGTTTATGGTTGATATAATCCAGTCCTTTTATCTTCAGTCTTGTTGTAGGCACCTTATCCAAAACACGAGGACCCACTTATCCAAAACACGAGGACCCCTGCAATTAAAGATGCTCATCTTGGCTCCTCCATTTTCAACCAGTGGGATGATAACTTGAATAAGTACGCGGGGGTATTGTGAGAGTTTGAACGACCTTCAAAGGGACTGGTTGCGAGAAAT_-_ATGGCGAGGCAAAGTACTATACTGCTCTTTTGGAGCTTAGTATTCTTGGGTGCCATCGTATTTACTCAGGCCAAGCATGAGGATCTGGAAGAGGTGACACACAAGGTATACTTTGATGTGGATATTGCTGGAAAACCTGCTGGTCGAGTTGTTATTGGACTCTTTGGGAAAGCTGTACCCAAAACTGTAGAGAATTTTCGGGCACTTTGTACAGGTGAGAAGGGGGTTGGAAAAAGTGGAAAGCCACTCCATTACAAGGGAAGTTTTTTCCATAGGATCATTCCCAGCTTCATGATTCAAGGTGGTGATTTCACTCTTGGAGATGGCAGAGGGGGAGAGTCAATCTATGGAACTAAATTTGCTGATGAGAACTTCAAACTCAAGCACACAGGACCAGGATTCCTCTCCATGGCAAATGCTGGTxxxxxxATTACCACAGTAACAACCGACTGGTTGGACGGCAGACATGTTGTCTTTGGAAAAATTATTTCTGGAATGGATGTTGTATATAAAGTAGAAGCAGAAGGAAGACAGAGTGGTCAACCAAAAAGGAAAGTAAAGATTGCAGACAGTGGAGAGCTTTCTATGGATTAG___CTTACTCTTCTAGTTGAGATCTCCATCAATCAATGGATACAAACATTGAGTTTCAGTTTGGCAAACCGACATTCCCAAATTTAATGAGCCAATATGTTTGGATCGTCATAAAGCCTGGGATAATCTTAAATAATAAATATCGAGTTGGTGACCCAGTTAGCTGTTAATTTATAATCTCCGCATCTCCCCCAAT

Fln Alignment:

Contig26925___MARQSTILLFWSLVFLGAIVFTQAKHEDLEEVTHKVYFDVDIAGKPAGRVVIGLFGKAVPKTVENFRALCTGEKGVGKSGKPLHYKGSFFHRIIPSFMIQXXXXXXXXXXXXESIYGTKFADENFKLKHTGPGFLSMANAGPxxxxxxxFITTVTTDWLDGRHVVFGKIISGMDVVYKVEAEGRQSGQPKRKVKIADSGELSMD
A9NK21_______________MARQSTILLFWSLVFLGAIAFTQAKNENPEEITHKVYFDVEIAGKPAGRVVIGLFGKTVPKTVENFRALCTGEKGVGKSGKPLHYKGSFFHRIIPSFMIQGGDFTLGDGRGGESIYGIKFADENFKLKHTGPGFLSMANAGPxxxxxxxFITTVTTDWLDGRHVVFGKVISGMDVVYKVEAEGKQSGQPKRKVKIADSGELSTD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain