SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26911

Length: 457 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene26911
TCTCTTTACACTCTCTGATTTGCAGAAGGGTGTGGTAACCAAAAAATTCCTCTTGATCCGCTATTGAACAAGACAGGAGATGTATGGCATGCATTCCTTCCTGGAACATTTGAAGATTTGTTGTATGGTTATAAAGTTGATGGACAATATTGTCCCGAAGAAGGCCAGCGTTATAATCCCTCCTGCATTTTGTTGGATCCTTATGCTAAGGCGGTCATAAGCAGAGGAGAGTATGGTATTCTAGGGTCTGGAGGGAATTGTTGGCCTCAAATGGCTGGCATGGTCCCGGTTCCAGATGATGAGTTTGATTGGGAAGGAGATCTACCTCTGAAACTTCCCCAGAGGGACCTTTTTATTTACGAAATGCATGTTCGTGGTTTTACTAACCATAATTCAAGCAGGGTTAATTATCCAGGGACATATCGTGGCATGGTTGAGAAACTACAACACTTGAAGG

Ace file of the UniGene sp_v2.0_unigene26911

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isoamylase isoform 1 n=2 Tax=Solanum tuberosum RepID=Q84YG7_SOLTU	-	-	71%
FL-Next	sp=Isoamylase 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	isoamylase type debranching enzyme	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isoamylase.	EC:3.2.1.68	-	0.0	79%
Blast2go	L-arabinokinase.	EC:2.7.1.46	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	amylopectin biosynthetic process	GO:0010021	Biological Process	79%
Blast2go	arabinose metabolic process	GO:0019566	Biological Process	79%
Blast2go	isoamylase activity	GO:0019156	Molecular Function	79%
Blast2go	L-arabinokinase activity	GO:0009702	Molecular Function	79%
Blast2go	chloroplast isoamylase complex	GO:0010368	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04196

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 530 aas, your sequence is shorter than subject: 152 - 783

Fln protein: SLYTL*FAEGCGNQKIPLDPLLNKTGDVWHAFLPGTFEDLLYGYKVDGQYCPEEGQRYNPSCILLDPYAKAVISRGEYGILGSGGNCWPQMAGMVPVPDDEFDWEGDLPLKLPQRDLFIYEMHVRGFTNHNSSRVNYPGTYRGMVEKLQHLK

Protein Length: 153

Fln nts: TCTCTTTACACTCTCTGATTTGCAGAAGGGTGTGGTAACCAAAAAATTCCTCTTGATCCGCTATTGAACAAGACAGGAGATGTATGGCATGCATTCCTTCCTGGAACATTTGAAGATTTGTTGTATGGTTATAAAGTTGATGGACAATATTGTCCCGAAGAAGGCCAGCGTTATAATCCCTCCTGCATTTTGTTGGATCCTTATGCTAAGGCGGTCATAAGCAGAGGAGAGTATGGTATTCTAGGGTCTGGAGGGAATTGTTGGCCTCAAATGGCTGGCATGGTCCCGGTTCCAGATGATGAGTTTGATTGGGAAGGAGATCTACCTCTGAAACTTCCCCAGAGGGACCTTTTTATTTACGAAATGCATGTTCGTGGTTTTACTAACCATAATTCAAGCAGGGTTAATTATCCAGGGACATATCGTGGCATGGTTGAGAAACTACAACACTTGAAGG

Fln Alignment:

Contig26911___QKIPLDPLLNKTGDVWHAFLPGTFEDLLYGYKVDGQYCPEEGQRYNPSCILLDPYAKAVISRGEYGILGSGGNCWPQMAGMVPVPDDEFDWEGDLPLKLPQRDLFIYEMHVRGFTNHNSSRVNYPGTYRGMVEKLQHLK
O04196_______________EEIQLDPSRNRTGHVWHVFLRGDFKDMLYGYRFDGKFSPEEGHYYDSSNILLDPYAKAIISRDEFGVLGPDDNCWPQMACMVPTREEEFDWEGDMHLKLPQKDLVIYEMHVRGFTRHESSKIEFPGTYQGVAEKLDHLK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
330	20		80		0.995493
425			66	33	0.997452
444	33			66	0.997452
445		33	66		0.997452
447	66			33	0.997452
448		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain