SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26827

Length: 1041 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26827

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase delta catalytic subunit n=6 Tax=Poaceae RepID=DPOD1_ORYSJ	-	-	75%
FL-Next	sp=DNA polymerase delta catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	86%
Blast2go	dna polymerase delta subunit 1	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3		IPR017966	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRE6

Fln msg: Separated hits, possible frame ERROR between 653 and 832, Unexpected STOP codon at 3' end. Distance to subject end: 276 aas, your sequence is shorter than subject: 319 - 1105

Fln protein: DLGCHSFLLSRGQSIKVLSQILRKSRQKNLLVPNIKGQGSGQETFEGATVLEAKSGFYEKPIATLDFASLYPSIMMAYNLCYCSLVRSEDIAKFNLQPECVNKTPSGETFVKPTLQKGILPEILEELLAARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKRLVEERFTIVGGYQYNAEVGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDTDSVMIQSDVPNIEEAMTLGREASDYISGTFTKVQCQEF*

Protein Length: 320

Fln nts: GTGACCTTGGCTGTCACTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAGAATCTTCTTGTGCCAAATATTAAAGGCCAAGGCTCTGGACAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGTTTCTATGAAAAACCAATTGCAACTCTGGACTTTGCGTCCTTGTATCCTTCAATCATGATGGCATATAATCTTTGTTATTGCAGCTTGGTGAGGTCAGAGGACATTGCAAAATTTAATCTCCAGCCAGAGTGTGTAAATAAAACACCATCGGGCGAGACTTTTGTGAAGCCAACTTTACAGAAGGGTATATTACCAGAGATCCTAGAAGAGTTACTGGCCGCCAGGAAAAGAGCCAAGGCAGACCTAAAGGAGGCTAAAGATCCTTTTGAAAAGGCTGTCTTGGACGGCCGACAATTGGCTTTGAAGATCAGTGCGAATTCAGTTTATGGGTTTACTGGTGCCACTGTTGGGCAATTGCCCTGTTTGGAGATTTCGTCGAGTGTGACGAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACAATGCTGAGGTAGGCTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGAGATACAGATTCAGTTATGATACAGTCTGATGTACCAAATATAGAAGAGGCCATGACGCTAGGGAGGGAAGCCTCAGATTATATTAGTGGTACATTTACAAAAGTACAGTGTCAAGAATTTTAAATATCCGTGAAGCCTCTAGAGTTGTTAATGATGTTTTTGTAGGGATGAATGTTTTAATATCACCTTTCTTTTTAAAACTAATGT

Fln Alignment:

Contig26827___SFLLSRGQSIKVLSQILRKSRQKNLLVPNIKGQGSGQETFEGATVLEAKSGFYEKPIATLDFASLYPSIMMAYNLCYCSLVRSEDIAKFNLQPECVNKTPSGETFVKPTLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKRLVEERFTIVGGYQYNAEVGYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDTDSVMIQSDVPNIEEAMTLGREASDYISGTFTKVQCQEF
Q9LRE6_______________SFLLSRGQSIKVLSQLLRKAKQKNLVIPNIKGQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain