SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26780

Length: 733 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26780

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter PTR1 n=2 Tax=Arabidopsis RepID=PTR1_ARATH	-	-	7.0e-34	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	peptide transporter ptr3-a	-	-	3.09881e-39	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	tripeptide transport	GO:0042939	Biological Process	3.09881e-39	68%
Blast2go	dipeptide transport	GO:0042938	Biological Process	3.09881e-39	68%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	3.09881e-39	68%
Blast2go	tripeptide transporter activity	GO:0042937	Molecular Function	3.09881e-39	68%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	3.09881e-39	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.09881e-39	68%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	POX	IPR006563	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
403		87	12		0.992554
404	87			12	0.992554
405		12	87		0.992554
407	87			12	0.992554
409	12		87		0.992554
411	87	12			0.992554
412			87	12	0.992554
413		87		12	0.992554
414		87	12		0.992554
417	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain