SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26637

Length: 1841 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26637 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	carbohydrate-binding X8 domain-containing protein [Arabidopsis thaliana] gb\|ABF59221.1\| unknown protein [Arabidopsis thaliana] gb\|AEC08461.1\| carbohydrate-binding X8 domain-containing protein [Arabidopsis thaliana]	-	-	2.0e-25	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	hydrolyzing o-glycosyl	-	-	1.13083e-32	74%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZF3

Fln msg: your sequence is longer than subject: 322 - 212

Fln protein: MDELSSSQGQLRLGLRKVLEKKATTVTNSDEVRPSELGNITPSTTPHSRYTYPITTPTPPAIITTPTPVITPPTTPTTTPILNPPTAPVTTTPTTPTTTTPAVSGTQSWCVARTNVPENSLQVALDYACGIGGADCKAVQQAGQCYQPITVAAHASYAFNSYYQKNNKAPGTCDFGGNAIITTTNPSYGSCIYASGSSTISTPPPATIITAPPPPATVGISAAPPPPATIGIVAAPPPPFGTTPTTTTPGYNVSTPTGGITSPTGGGITSPTVGGITGGLGPSASTYNTTPTYGSAPSFFQDLPSSFILFLLSLVVAVILG*

Protein Length: 323

Fln nts: GTTGCTACTATCTGCTATGTATTGTTCAGAACAACTCCAGATGTTGTTAGTGATGAGAAACAGGGGATTGGGGTTTGGTGTAAGCCTTGCAGTAGATGAATGCCTAAAATTACTTTTAGGCCCCTCTTTCGAAGGGCGGCAGCAAACTAAGGAGGCTATGCAATGGGCAGCAAATTTAGATCTTGAGTTCTCAGAGGCCTTATAAAACTTTATTGCCGGTTACAGTTAGTCTGTAGAGATCTTGTGCTCGAAAGAAAATGTTTTTTGTTTGACGGATTTCAGTTTTGAGTTGTGATAACTTTTCTGGGTCTGTTTTGGCAGGATCTCTGGATGTAAATGGGAAGAGT_-_ATGGACGAGCTGAGTAGTAGTCAAGGACAGTTGCGATTAGGTTTGAGAAAGGTTTTAGAAAAGAAAGCTACTACTGTAACCAATAGCGATGAGGTTCGCCCTTCTGAATTAGGGAACATCACACCCAGCACAACACCTCATTCTCGTTATACTTACCCCATCACAACGCCCACTCCCCCCGCGATCATAACAACACCAACGCCTGTTATAACACCACCTACAACTCCCACAACTACACCTATCCTCAATCCCCCTACAGCCCCTGTAACTACCACTCCTACAACCCCCACAACCACCACCCCTGCTGTATCAGGGACTCAGAGCTGGTGCGTGGCCAGGACCAATGTTCCAGAAAATTCCTTGCAGGTCGCTCTTGATTACGCCTGTGGTATCGGAGGTGCAGACTGTAAAGCTGTACAACAAGCAGGGCAATGCTATCAGCCAATAACAGTTGCAGCCCACGCTTCCTACGCATTCAACAGTTACTACCAGAAGAATAATAAGGCACCCGGGACCTGTGACTTCGGCGGCAATGCAATCATTACCACAACCAATCCGAGCTATGGGAGCTGCATATATGCTTCAGGGTCGAGCACTATCAGCACTCCGCCTCCTGCAACAATTATTACTGCACCACCTCCTCCAGCCACGGTTGGTATTAGTGCTGCTCCACCTCCTCCAGCCACGATTGGTATTGTTGCTGCTCCACCTCCTCCATTTGGCACCACTCCAACTACTACCACTCCAGGGTACAATGTCAGCACTCCAACCGGGGGTATTACTTCTCCTACTGGTGGTGGTATTACCAGTCCCACAGTGGGGGGCATTACTGGAGGCCTGGGACCAAGTGCGTCTACATACAATACTACGCCCACATATGGCAGCGCACCATCATTCTTCCAGGATCTGCCTTCGTCATTTATATTATTCCTCTTGTCTTTAGTTGTGGCTGTAATACTAGGCTAA___GTACTTCAAATGCTAGCTCTGTCTGTTTACTAGTGCCATAGCTAGCATGCCAAGCGATGAGAATGATGTTGTAGAAATGCTCATCTTTAGTAGCTCCTACAAGCTATTTGCTTTTGTTAAGAGGCCTCAGGTGAAAATTTGGTTGGGAGATTTTTGGAGATGGGCATAGAAGTGCAGGTCAACCCTTTATTCTTTGCAAGAGATGCATGAGTAAGGGGGGCATATTGTTCCCAAATTTTCATATGTACATTGAATGCTTTGCAAGAGCTGGTACATTCCTTGCCCACTCGCATTTGCTATCTCTTCAACAAATAATACTATCTTCATCCATGCTGTGTTCTCTCTACTGCATTTTAATATTGCGTGTTCAGTTGTGAATGTCTGATCAAGGGTGAAGTTCCACAGCAATTTGACACAAAGTTTAACCATACTACATCTTATAATGCTAGTAGCAGTAACTTCTGTATAATATGCCCTATTGAGATCCAGGAGATGGATATATGCCCACCTCAGAAGCCAGCCAATGCT

Fln Alignment:

Contig26637___SGTQSWCVARTNVPENSLQVALDYACGIGGADCKAVQQAGQCYQPITVAAHASYAFNSYYQKNNKAPGTCDFGGNAIITTTNPSYGSCIY
A9NZF3_______________SAGTTWCVAKNNVGDSTLQVALDYACGLGGADCTAIQQGGVCFDPDNVQAHASYAFNSYYVKNGMLPGTCDFAGSAAPTTNNPSFGKCMF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1659		80		20	0.995493
1660	80		20		0.995493
1663	80			20	0.995493
1664			20	80	0.995493
1665	20	80			0.995493
1666		20		80	0.995493
1668	80		20		0.995493
1669	80	20			0.995493
1670		20		80	0.995493
1671	20			80	0.995493
1672	20			80	0.995493
1674		80	20		0.995493
1678	20	80			0.995493
1680	80		20		0.995493
1681	20			80	0.995493
1682		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain