SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55686

Length: 496 nt

UniGene Fasta

>uagpf_v2_unigene55686
CGTCGTGACCTTGGCTGTCACTCAGATTCATCCTTAACTAGTTGTAAAACACACATTATATTTAAATTATTATTTTTCCCACTTAGGGTTTGAGAATACGCCTCTCTCGTTAGGGTTTTGTGGCAAGGTTTCTTCAAGTTAGATATTTCTACGAGCCAGAGCACTACGAGCGCAAAACGGCGAGCGTTTGCAGGTGGCGGCAGCAGTAGCAGGAGGAGATCCAGAAGGAAGAGGTAAGTCACGATGGTGAGGATAAGTGTTTTGAACGATGCACTTAGGAGCATGTATAATGCTGAAAAGCGGGGGAAACGACAAGTGATGATCAGACCATCATCAAAAGTTATCATCAAGTTCCTTCAAGTCATGCAAAAGCATGGCTACATTGGAGAGTTTGAGCTTGTCGACGATCACAGAGCAGGTAAAATTGTTGTGGAGCTTAACGGAAGACTTAACAAGTGTGGAGTCATCAGTCCGCGTTTTAATATTGGGGTTTCGC

Ace file of the UniGene uagpf_v2_unigene55686

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene76793	2/5
SustainPine v2.0	sp_v2.0_unigene79108	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S15a-1 n=32 Tax=Tracheophyta RepID=R15A1_ARATH	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%
Blast2go	cell wall	GO:0005618	Cellular Component	96%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	96%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	96%
Blast2go	mitochondrion	GO:0005739	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8	IPR000630	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN71

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 84 - 130

Fln protein: MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVS

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTCATCCTTAACTAGTTGTAAAACACACATTATATTTAAATTATTATTTTTCCCACTTAGGGTTTGAGAATACGCCTCTCTCGTTAGGGTTTTGTGGCAAGGTTTCTTCAAGTTAGATATTTCTACGAGCCAGAGCACTACGAGCGCAAAACGGCGAGCGTTTGCAGGTGGCGGCAGCAGTAGCAGGAGGAGATCCAGAAGGAAGAGGTAAGTCACG_-_ATGGTGAGGATAAGTGTTTTGAACGATGCACTTAGGAGCATGTATAATGCTGAAAAGCGGGGGAAACGACAAGTGATGATCAGACCATCATCAAAAGTTATCATCAAGTTCCTTCAAGTCATGCAAAAGCATGGCTACATTGGAGAGTTTGAGCTTGTCGACGATCACAGAGCAGGTAAAATTGTTGTGGAGCTTAACGGAAGACTTAACAAGTGTGGAGTCATCAGTCCGCGTTTTAATATTGGGGTTTCGC

Fln Alignment:

uagpf_mira_rep_c92511___MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGV
A9NN71________________MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGV

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
112			33	66	0.997476
115		33	66		0.997476
116		33	66		0.997476
119			33	66	0.997459
120			33	66	0.997459
121		33	66		0.997464
124			66	33	0.997476
129		33	66		0.997476
155	75	25			0.996477
157		75		25	0.996477
161	75			25	0.996477
163	25	75			0.996477
164	75	25			0.996477
167	66			33	0.997452
168		66	33		0.997452
170	66	33			0.997452
171			66	33	0.997452
172		66	33		0.997452
173			66	33	0.997452
176	75	25			0.99649
177	75			25	0.99649
178	75	25			0.99649
179	33	66			0.997452
306		25	75		0.996473
308	80			20	0.995499
309	80	20			0.995499
310	80		20		0.995499
311		80		20	0.995496
315	80	20			0.995496
316	80			20	0.995496
317			75	25	0.996473
318			25	75	0.996473
320	75	25			0.996473
328	75	25			0.996473
329		75		25	0.996473
334	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain