SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55119

Length: 513 nt

UniGene Fasta

>uagpf_v2_unigene55119
CGTCGTGACCTTGGCTGTCACTCAACTCTTGCCTCGACGGCTTTCAAGTTGCCAGAGGGATGGTTAAGGCCATGGTCACGGGCCGCGTGCAGAATGTGTGACCTTGTCTGCACTCCTCGCTCTCCTCAACAAATTCGCTGCCACCGAAGGAGGATATTAGATCGGTGTCTGTCACTAAACGCCTGCAAGATATTTTGATATGTTTTGAATATTCAATGTATTCTGTATATAATAACTCCTCTTTTGCTTTCTAGGGCTCTGGCATTAAGCCAAATCTAGGGTTGTATTGGGCTGTACACTTTGTAACACGGTGTGTAGAGTATTCAGGAGGTTTCTGTAAGGAAAAAGATTGGAGATTCAGAGTCCGCTGGAGTATTGAGGAAGGTTTGTAATTGTAAAACAATAATATTCGACTTTTCTAAAGTTCTAACCTTTGTCTGCCTATTGATTTTGATGGTCTAACCTCAAATTTTCTTATTTGCATTGTTATCCTCTGCAAAATTGGGGATCAAT

Ace file of the UniGene uagpf_v2_unigene55119

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18579	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	21 kD protein n=1 Tax=Pinus radiata RepID=O65011_PINRA	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	21 kda protein	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pectinesterase inhibitor	IPR006501	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPS0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 84 - 204

Fln protein: S*PWLSLNSCLDGFQVARGMVKAMVTGRVQNV*PCLHSSLSSTNSLPPKEDIRSVSVTKRLQDILICFEYSMYSVYNNSSFAF*

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCTTGCCTCGACGGCTTTCAAGTTGCCAGAGGGATGGTTAAGGCCATGGTCACGGGCCGCGTGCAGAATGTGTGACCTTGTCTGCACTCCTCGCTCTCCTCAACAAATTCGCTGCCACCGAAGGAGGATATTAGATCGGTGTCTGTCACTAAACGCCTGCAAGATATTTTGATATGTTTTGAATATTCAATGTATTCTGTATATAATAACTCCTCTTTTGCTTTCTAG___GGCTCTGGCATTAAGCCAAATCTAGGGTTGTATTGGGCTGTACACTTTGTAACACGGTGTGTAGAGTATTCAGGAGGTTTCTGTAAGGAAAAAGATTGGAGATTCAGAGTCCGCTGGAGTATTGAGGAAGGTTTGTAATTGTAAAACAATAATATTCGACTTTTCTAAAGTTCTAACCTTTGTCTGCCTATTGATTTTGATGGTCTAACCTCAAATTTTCTTATTTGCATTGTTATCCTCTGCAAAATTGGGGATCAAT

Fln Alignment:

uagpf_mira_rep_c89632___NSCLDGFQVARGMVKAMVTGRVQNV*PCLHSSLSSTNSLPPKEDIRSVSV
A9NPS0________________DSCLDGFQVAKGRVKAMVTGRVQKVCKMISNALALLNKFAATEGEYEIDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain